CSPI06G19170 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G19170
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6 : 17366817 .. 17368752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGGTTTCTCTCCAAACTCATCTACACCTTCATATACTAATAATTCTTACAATCCACAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGTTTGCCAATACTTTATTATGGTTCTTTGCATTTTAATTTAATTCATCATTTATTCCTTCAAAATCTTTGGTTCTGGAAAATTTACTTCATATCTCCTCCATTACAAAGTTTTTTTTGAATTTCATCCCGCTGTTTGTTATGTGAAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTGTAATGGTGTATACAAGTTTAGCCTCAAATCATCTTCTCCAAGTTTTTTGAAATTTGAATCTAATACTAGTCCTATTGCTTTAAGTATTGTCTTACATAATTCTCATGTGAATGATATTGATATTTGGCATAAGAGATTAAGTCATCCTCACTCAAATGTTATCCGAAATGCCTTGAAAAATGTTTATAATGCCAATATTAGTATGAATAAAATGAATTTATGTGAAGCATGTGCTCTAGAAAACATCATGCTCTTCCCTTTCCTACTTCAAATACTGAATATATATATCCTTTACAACTCATTGTATGTGATTTTTGGGACCCTGCTTTTAACCTATCTAAAAATGGCTGCGTATATTATATTAGTTTTGTTGATGCATATAGTAGATATACTTGGATTTATTTTCTTCAATCTAAGTTTGATGCATTTGTAGCCTTTCAAAAATTCAAAACATTCATTGAAAAACAACTTGGCCGACCAATCATAATCTTTCAAACTGACAGGGGAAGTGAATTCAAACCTTCCATACCTTACCTAAACAACCATGACGTTGAACATAGATTAACCTGTCCACACACTTCTCTCTCAAGCTACTTTACCTTTATCCTTTTGGGATGAAGCTTTCTCAACAACTGTGTATCTTATCAATCGCCTACCCACACCTATTCTTAATCACCTTAGTCCATTGGAAAAATTATTTGGTCAGGAAACCTAACTATCCTTCTCTAAAAAAATTTGGTTGTAAATGTTGTCCTTTCATCAAACCTTATAAATTCCACAAACTATCTTACAGATTCACATCATGTACCTTCTTAGGCTACAGTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

mRNA sequence

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

Coding sequence (CDS)

ATGGTGGAGGTAAATCAAATAGAGGAGGAAGAGGAAACAGAAACAAACCTCGGTGTCAAATTTGTACAAAATTCGGTCACATTGTTGATCGATGCTACTTTCGATATGCTCCAAGAAATAATTCAGATGGCTGCCATGATTGCTGCTCCTGATCTGAATATTGATTCTAATTGGTACCCTGACTCTGGAGCTACAAACCACTTAACACACAGCTTGAGTAATCTATCCACTGGAGCTGATTATAATGGAGGAAATCAGATATATGCAGTAAATGGGTCAGGATCAGGGAACTGGCCAAATTCTTCTCCAAGGACACCTCTTTCATCCCACAAAGGTTATAATTGCCTTTCTCAAGATGGTCGCATTTACATATCCAGACATGTTCTATTTGATGAAGATTCCTTTTCCTATGCATCTTTTTCATCTCATTGTAAAACTTTATCAACAAAAAGTGTCTTGGCTACTCCAATCCAGTCCATAGTCCATAAGCCAACAATGAATCATAATGAAGAGAGGCAACACACTAATACATTCACTGATAATAATGATAATTTGAATTCTACTGCTGTGTATCCCTTAGAAACAGGAAGTCAGGAACAATATGGAGATGAGTTACCAAGAGGAGACCGTGAGAATAAGCAAATATCATCACAGACCCAAGATGACTCTACCAATACAGATCAATCCTTAAATCTCAATACTCATCCAATGGTAACTCGGAGCAAAAGTGGTATTTATAAACCTAAACCTTTCTTAATTGATTATACTGAGACTGAAGCTAAAGAAGCTTTAAAGCGTCCTCACTGGAGGAAAGCTATGGAAGAAGATTTTAAAGCTTTAAAACAAAATAACACATGGAGTCTCACTCAGAAACAGGAAAATCAAAAAATGTATTGTGTTGGCTGTAAA

Homology

[Close]

BLAST of CSPI06G19170 vs. TrEMBL
Match: A0A151TVT8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_010404 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-15
Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 1


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CLS  G+IYIS+ V+F+E  F Y     H          +TP+ S     T+N
Sbjct: 674 NSHKGYKCLSASGKIYISKDVIFNETRFPYLDLFQH---------TSTPVPSPSQYFTLN 733

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDEL----PRGDRENKQISSQTQDDS 227
            +     ++T        +S    P+   S     D +    P   + N   SS      
Sbjct: 734 PDLSPPCSHT------TASSLPFIPVSETSNHSGQDNILSVSPTVSQFNSTPSSPVSSTP 793

Query: 228 TNTDQSLNLNTHPMVTRSKSGIYKPKP----FLIDYTETEAKEALKRPHWRKAMEEDFKA 287
           TNT  S  +N H M TRSKSGIYKPK     FL        K+AL  P W  AM++++ A
Sbjct: 794 TNT-VSRTINNHSMQTRSKSGIYKPKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSA 853

Query: 288 LKQNNTWSLTQKQENQKMYCVGCK 304
           L QN+TW L     N++   VGCK
Sbjct: 854 LLQNHTWDLVPLPSNRQ--AVGCK 859

[Close]

BLAST of CSPI06G19170 vs. TrEMBL
Match: A5BK17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024648 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           +HKGY CLS +G I ISR V+FDE +F +A   S  +  S+ S   T +      P M  
Sbjct: 762 NHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQKQXTSSFSSSXTSLPCQTSLPLMVL 821

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDDSTNTDQ 228
                 T+  T +  N    +++P  +                N  ++SQ    S     
Sbjct: 822 PSS---TSCSTSSPTN---PSIFPATS----------------NHNVASQXPPSSAPPFP 881

Query: 229 SLNLNTHPMVTRSKSGIYKPKPFLIDYTETEAKEALKRPHWRKAMEEDFKALKQNNTWSL 288
           S     H M+TRSK GI+KPK +LI  T T   EAL+  HW++AM +++ AL +NNTW L
Sbjct: 882 S-----HHMITRSKXGIFKPKAYLISTTPTSVPEALQLSHWKQAMTDEYLALLRNNTWDL 927

Query: 289 TQKQENQKMYCVGCK 304
                ++K+  +GCK
Sbjct: 942 VPPPTDRKL--IGCK 927

[Close]

BLAST of CSPI06G19170 vs. TrEMBL
Match: A0A151RDA3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_038219 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           SHKGY CLS+ GRIYIS+ V+F+E  F Y   +    T +  S+ AT + SI+     +H
Sbjct: 256 SHKGYKCLSRSGRIYISKDVIFNEGRFPY---NDLFVTTTQASIPATSV-SILPSLVCSH 315

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQ-EQYGDELPRGDRENKQISSQTQDDSTNTD 228
           N                +ST + P  T S      + LP     N   +S T   S+++ 
Sbjct: 316 NPS--------------SSTLISPAITASSGSSESNFLPSSTPVNSSTTSPTASSSSHSP 375

Query: 229 QSLNLNTHPMVTRSKSGIYKPK---PFLIDYTETE-AKEALKRPHWRKAMEEDFKALKQN 288
            +   N HPM+TRSK+GI +P+     L+   E +  K AL  PHW  AM+ +  AL  N
Sbjct: 376 PAPPRNAHPMITRSKNGIIQPRINPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHAN 435

Query: 289 NTWSLTQKQENQKMYCVGCK 304
           +TW+L +    +K   +GC+
Sbjct: 436 HTWTLVELPSGRKP--IGCR 435

[Close]

BLAST of CSPI06G19170 vs. TrEMBL
Match: A0A151TE57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_011518 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           SHKGY CLS+ GRIYIS+ V+F+E  F Y   +    T +  S+ AT + SI+     +H
Sbjct: 725 SHKGYKCLSRSGRIYISKDVIFNEGRFPY---NDLFVTTTQASIPATSV-SILPSLVCSH 784

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQ-EQYGDELPRGDRENKQISSQTQDDSTNTD 228
           N                +ST + P  T S      + LP     N   +S T   S+++ 
Sbjct: 785 NPS--------------SSTLISPAITASSGSSESNLLPSSTPVNSSTTSPTASSSSHSP 844

Query: 229 QSLNLNTHPMVTRSKSGIYKPK---PFLIDYTETE-AKEALKRPHWRKAMEEDFKALKQN 288
            +   N HPM+TRSK+GI +P+     L+   E +  K AL  PHW  AM+ +  AL  N
Sbjct: 845 PAPPRNAHPMITRSKNGIIQPRINLTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHAN 904

Query: 289 NTWSLTQKQENQKMYCVGCK 304
           +TW+L +    +K   +GC+
Sbjct: 905 HTWTLVELPSGRKP--IGCR 904

[Close]

BLAST of CSPI06G19170 vs. TrEMBL
Match: A0A151S9Q4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_026657 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 69/200 (34.50%), Postives = 98/200 (49.00%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           SHKGY CLS+ GRIYIS+ V+F+E  F Y        T +  S+ AT + SI+     +H
Sbjct: 387 SHKGYKCLSRSGRIYISKDVIFNEGRFPYNDLFI---TTTQASIPATSV-SILPSLVCSH 446

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQ-EQYGDELPRGDRENKQISSQTQDDSTNTD 228
           N                +ST + P  T S      + LP     N   +S T   S+N+ 
Sbjct: 447 NPS--------------SSTLISPAITASSGSSESNFLPSSTPVNISTTSPTASSSSNSP 506

Query: 229 QSLNLNTHPMVTRSKSGIYKPK---PFLIDYTETE-AKEALKRPHWRKAMEEDFKALKQN 288
            +   N HPM+TRSK+GI +P+     L+   E +  K AL  PHW  AM+ +  AL  N
Sbjct: 507 PAPPRNDHPMITRSKNGIIQPRINATLLLSNVEPKTVKSALTDPHWLAAMQAEITALHAN 566

Query: 289 NTWSLTQKQENQKMYCVGCK 304
            TW+L +    +K   +GC+
Sbjct: 567 RTWTLVELPSGRKP--IGCR 566

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: gi|659071665|ref|XP_008461310.1| (PREDICTED: uncharacterized protein LOC103499934 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 42  QMAAMIAAPDLNIDSNWYPDSGATNHLTHSLSNLSTGADYNGGNQIYAVNGSGSGNWPNS 101
           QM+A +A+PDLNIDSNWYPDSGATNHLT+SLSNLST ++Y GGNQIY  NGSGSG WP++
Sbjct: 124 QMSATVASPDLNIDSNWYPDSGATNHLTYSLSNLSTRSEYGGGNQIYVANGSGSGYWPST 183

Query: 102 SPRT 106
           S RT
Sbjct: 184 SSRT 187

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: gi|1012359976|gb|KYP71160.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 90.1 bits (222), Expect = 7.1e-15
Identity = 72/204 (35.29%), Postives = 96/204 (47.06%), Query Frame = 1


Query: 108 SSHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMN 167
           +SHKGY CLS  G+IYIS+ V+F+E  F Y     H          +TP+ S     T+N
Sbjct: 674 NSHKGYKCLSASGKIYISKDVIFNETRFPYLDLFQH---------TSTPVPSPSQYFTLN 733

Query: 168 HNEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDEL----PRGDRENKQISSQTQDDS 227
            +     ++T        +S    P+   S     D +    P   + N   SS      
Sbjct: 734 PDLSPPCSHT------TASSLPFIPVSETSNHSGQDNILSVSPTVSQFNSTPSSPVSSTP 793

Query: 228 TNTDQSLNLNTHPMVTRSKSGIYKPKP----FLIDYTETEAKEALKRPHWRKAMEEDFKA 287
           TNT  S  +N H M TRSKSGIYKPK     FL        K+AL  P W  AM++++ A
Sbjct: 794 TNT-VSRTINNHSMQTRSKSGIYKPKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSA 853

Query: 288 LKQNNTWSLTQKQENQKMYCVGCK 304
           L QN+TW L     N++   VGCK
Sbjct: 854 LLQNHTWDLVPLPSNRQ--AVGCK 859

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: gi|147783806|emb|CAN74695.1| (hypothetical protein VITISV_024648 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           +HKGY CLS +G I ISR V+FDE +F +A   S  +  S+ S   T +      P M  
Sbjct: 762 NHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQKQXTSSFSSSXTSLPCQTSLPLMVL 821

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQEQYGDELPRGDRENKQISSQTQDDSTNTDQ 228
                 T+  T +  N    +++P  +                N  ++SQ    S     
Sbjct: 822 PSS---TSCSTSSPTN---PSIFPATS----------------NHNVASQXPPSSAPPFP 881

Query: 229 SLNLNTHPMVTRSKSGIYKPKPFLIDYTETEAKEALKRPHWRKAMEEDFKALKQNNTWSL 288
           S     H M+TRSK GI+KPK +LI  T T   EAL+  HW++AM +++ AL +NNTW L
Sbjct: 882 S-----HHMITRSKXGIFKPKAYLISTTPTSVPEALQLSHWKQAMTDEYLALLRNNTWDL 927

Query: 289 TQKQENQKMYCVGCK 304
                ++K+  +GCK
Sbjct: 942 VPPPTDRKL--IGCK 927

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: gi|1012328826|gb|KYP40443.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           SHKGY CLS+ GRIYIS+ V+F+E  F Y   +    T +  S+ AT + SI+     +H
Sbjct: 256 SHKGYKCLSRSGRIYISKDVIFNEGRFPY---NDLFVTTTQASIPATSV-SILPSLVCSH 315

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQ-EQYGDELPRGDRENKQISSQTQDDSTNTD 228
           N                +ST + P  T S      + LP     N   +S T   S+++ 
Sbjct: 316 NPS--------------SSTLISPAITASSGSSESNFLPSSTPVNSSTTSPTASSSSHSP 375

Query: 229 QSLNLNTHPMVTRSKSGIYKPK---PFLIDYTETE-AKEALKRPHWRKAMEEDFKALKQN 288
            +   N HPM+TRSK+GI +P+     L+   E +  K AL  PHW  AM+ +  AL  N
Sbjct: 376 PAPPRNAHPMITRSKNGIIQPRINPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHAN 435

Query: 289 NTWSLTQKQENQKMYCVGCK 304
           +TW+L +    +K   +GC+
Sbjct: 436 HTWTLVELPSGRKP--IGCR 435

[Close]

BLAST of CSPI06G19170 vs. NCBI nr
Match: gi|1012354099|gb|KYP65286.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 68/200 (34.00%), Postives = 100/200 (50.00%), Query Frame = 1


Query: 109 SHKGYNCLSQDGRIYISRHVLFDEDSFSYASFSSHCKTLSTKSVLATPIQSIVHKPTMNH 168
           SHKGY CLS+ GRIYIS+ V+F+E  F Y   +    T +  S+ AT + SI+     +H
Sbjct: 725 SHKGYKCLSRSGRIYISKDVIFNEGRFPY---NDLFVTTTQASIPATSV-SILPSLVCSH 784

Query: 169 NEERQHTNTFTDNNDNLNSTAVYPLETGSQ-EQYGDELPRGDRENKQISSQTQDDSTNTD 228
           N                +ST + P  T S      + LP     N   +S T   S+++ 
Sbjct: 785 NPS--------------SSTLISPAITASSGSSESNLLPSSTPVNSSTTSPTASSSSHSP 844

Query: 229 QSLNLNTHPMVTRSKSGIYKPK---PFLIDYTETE-AKEALKRPHWRKAMEEDFKALKQN 288
            +   N HPM+TRSK+GI +P+     L+   E +  K AL  PHW  AM+ +  AL  N
Sbjct: 845 PAPPRNAHPMITRSKNGIIQPRINLTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHAN 904

Query: 289 NTWSLTQKQENQKMYCVGCK 304
           +TW+L +    +K   +GC+
Sbjct: 905 HTWTLVELPSGRKP--IGCR 904

The following BLAST results are available for this feature:

BLAST of CSPI06G19170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G19170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151TVT8_CAJCA	4.9e-15	35.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5BK17_VITVI	1.1e-14	33.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024648 PE=4 SV=1	[more]
A0A151RDA3_CAJCA	1.9e-14	34.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151TE57_CAJCA	1.9e-14	34.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151S9Q4_CAJCA	2.4e-14	34.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI06G19170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G19170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071665\|ref\|XP_008461310.1\|	1.6e-19	76.56	PREDICTED: uncharacterized protein LOC103499934 [Cucumis melo]	[more]
gi\|1012359976\|gb\|KYP71160.1\|	7.1e-15	35.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|147783806\|emb\|CAN74695.1\|	1.6e-14	33.85	hypothetical protein VITISV_024648 [Vitis vinifera]	[more]
gi\|1012328826\|gb\|KYP40443.1\|	2.7e-14	34.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|1012354099\|gb\|KYP65286.1\|	2.7e-14	34.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19170.1	CSPI06G19170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 108..140 score: 4.0E-16coord: 169..297 score: 4.0
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 169..297 score: 4.0E-16coord: 108..140 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G19170	CsaV3_6G032050	Cucumber (Chinese Long) v3	cpicucB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G19170	Silver-seed gourd	carcpiB0163
CSPI06G19170	Silver-seed gourd	carcpiB0733
CSPI06G19170	Watermelon (97103) v2	cpiwmbB513
CSPI06G19170	Wax gourd	cpiwgoB592
CSPI06G19170	Cucumber (Gy14) v1	cgycpiB042
CSPI06G19170	Cucurbita maxima (Rimu)	cmacpiB198
CSPI06G19170	Cucurbita maxima (Rimu)	cmacpiB816
CSPI06G19170	Cucurbita moschata (Rifu)	cmocpiB183
CSPI06G19170	Cucurbita moschata (Rifu)	cmocpiB800
CSPI06G19170	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G19170	Melon (DHL92) v3.5.1	cpimeB464
CSPI06G19170	Watermelon (Charleston Gray)	cpiwcgB522
CSPI06G19170	Watermelon (97103) v1	cpiwmB471
CSPI06G19170	Cucurbita pepo (Zucchini)	cpecpiB117
CSPI06G19170	Cucurbita pepo (Zucchini)	cpecpiB844
CSPI06G19170	Bottle gourd (USVL1VR-Ls)	cpilsiB478
CSPI06G19170	Melon (DHL92) v3.6.1	cpimedB456
CSPI06G19170	Cucumber (Gy14) v2	cgybcpiB287