CSPI05G00160.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G00160.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 218927 .. 219305 (+)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGGTGATCAGGACATTAAAATTTTATTACCCACTTACTGATTTTTCTTGATTGTTCCGTTTTTTCTGACTTGTAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

mRNA sequence

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

Coding sequence (CDS)

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

Homology

[Close]

BLAST of CSPI05G00160.1 vs. TrEMBL
Match: A0A0A0LH25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035480 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-11
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++  F R SSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLFTKLTHFYRSSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

[Close]

BLAST of CSPI05G00160.1 vs. NCBI nr
Match: gi|449453972|ref|XP_004144730.1| (PREDICTED: leucine aminopeptidase 1 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-11
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++  F R SSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLFTKLTHFYRSSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

[Close]

BLAST of CSPI05G00160.1 vs. NCBI nr
Match: gi|659070001|ref|XP_008452840.1| (PREDICTED: leucine aminopeptidase 1-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++     PSSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLLTKLTHLYCPSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

The following BLAST results are available for this feature:

BLAST of CSPI05G00160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G00160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH25_CUCSA	5.5e-11	71.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035480 PE=3 SV=1	[more]

BLAST of CSPI05G00160.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G00160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453972\|ref\|XP_004144730.1\|	7.9e-11	71.01	PREDICTED: leucine aminopeptidase 1 [Cucumis sativus]	[more]
gi\|659070001\|ref\|XP_008452840.1\|	3.9e-10	69.57	PREDICTED: leucine aminopeptidase 1-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G00160	CSPI05G00160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G00160.1	CSPI05G00160.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G00160.1.cds1	CSPI05G00160.1.cds1	CDS
CSPI05G00160.1.cds2	CSPI05G00160.1.cds2	CDS