CSPI05G00160 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G00160
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 218927 .. 219305 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGGTGATCAGGACATTAAAATTTTATTACCCACTTACTGATTTTTCTTGATTGTTCCGTTTTTTCTGACTTGTAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

mRNA sequence

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

Coding sequence (CDS)

ATGGCCGCCATTGTTGGATCCTTGGGCACCACCTTTGCTTCTTCCTCCTATTCCTTTCTTTCTTCTCATGAAATTAACCCATTTTGTCGCCCTTCTTCCTCTGCTTCTCGTCGGGTCTCTTTTGCTCTTGTTCCCTTCTGTTCTCGTAGCGTGAAGTTTATGGCTCACTCGCTGGCTCAGGCCAATCTCCGGCCTCGCAAATCCTGCCCCCCCAAGCGGCTTTTGTCTGCTTGGGTTTTCTTAGGAGTTGCCTTGTTGGTTTTTGTTTCTGGTTTTATGAGATTGAATCGATTGGAACTGCGTTGA

Homology

[Close]

BLAST of CSPI05G00160 vs. TrEMBL
Match: A0A0A0LH25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035480 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-11
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++  F R SSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLFTKLTHFYRSSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

[Close]

BLAST of CSPI05G00160 vs. NCBI nr
Match: gi|449453972|ref|XP_004144730.1| (PREDICTED: leucine aminopeptidase 1 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-11
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++  F R SSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLFTKLTHFYRSSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

[Close]

BLAST of CSPI05G00160 vs. NCBI nr
Match: gi|659070001|ref|XP_008452840.1| (PREDICTED: leucine aminopeptidase 1-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1  MAAIVGSLGTTF--ASSSYSFLSSH----EINPFCRPSSSASRRVSFALVPFCSRSVKFM 60
          MAAIVGSLGTTF  +SSSYSF SS     ++     PSSSASRRVSFA  PF SR  KFM
Sbjct: 1  MAAIVGSLGTTFVSSSSSYSFRSSSFLLTKLTHLYCPSSSASRRVSFAFDPFSSRRGKFM 60

Query: 61 AHSLAQANL 64
          AHSLAQANL
Sbjct: 61 AHSLAQANL 69

The following BLAST results are available for this feature:

BLAST of CSPI05G00160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G00160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH25_CUCSA	5.5e-11	71.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G035480 PE=3 SV=1	[more]

BLAST of CSPI05G00160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G00160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453972\|ref\|XP_004144730.1\|	7.9e-11	71.01	PREDICTED: leucine aminopeptidase 1 [Cucumis sativus]	[more]
gi\|659070001\|ref\|XP_008452840.1\|	3.9e-10	69.57	PREDICTED: leucine aminopeptidase 1-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G00160.1	CSPI05G00160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G00160	Cucumber (Chinese Long) v3	cpicucB286
CSPI05G00160	Watermelon (97103) v2	cpiwmbB376
CSPI05G00160	Wax gourd	cpiwgoB524
CSPI05G00160	Cucumber (Gy14) v1	cgycpiB417
CSPI05G00160	Cucurbita maxima (Rimu)	cmacpiB747
CSPI05G00160	Cucurbita moschata (Rifu)	cmocpiB741
CSPI05G00160	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G00160	Melon (DHL92) v3.5.1	cpimeB378
CSPI05G00160	Watermelon (Charleston Gray)	cpiwcgB371
CSPI05G00160	Watermelon (97103) v1	cpiwmB451
CSPI05G00160	Cucurbita pepo (Zucchini)	cpecpiB449
CSPI05G00160	Bottle gourd (USVL1VR-Ls)	cpilsiB341
CSPI05G00160	Bottle gourd (USVL1VR-Ls)	cpilsiB343
CSPI05G00160	Melon (DHL92) v3.6.1	cpimedB358
CSPI05G00160	Melon (DHL92) v3.6.1	cpimedB372
CSPI05G00160	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G00160	Silver-seed gourd	carcpiB0704