CSPI04G17020.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGGGGCAAGAGATGAGTTTACTCTTGATCTTGTAGAACAGTGTTCGTTTCAGAAGCAGAAACTAATGCATCTTGTGCTGTCTTCTCGGTATGGTTCCATCTTCGCCTGTTTCTTCCACAATGCATCAGTAATTGATTCCATTCAATGAATGGATGTTTTTCCTACTCAATGCTTTGTGAAACGATAACGTACTGTGTTAAGTAAATGAAAAGGAGACATGAAGCTACAAAATATTGTTGATATCATAATGGACAAATTTTGTAAATGAAAAAATGTGCAGTAATGTTTTTGTTTTCGTAACAACTTTGCGTGTAACTGAAAGAATCTCTTATATTGCTCACCCTGTTTTAACAATTGTAGATAGCTTCAAGGATGCTGAATTTGACACATCTGTAGATACCTCATAAATTAGTACATTATGAGAAATAAGCTTAATACAACGTTGCTTCCTTTTTCCAATTTACTGACCTTGAACTCTGCTATGTGACTGTTGTTTCAATTTTTCTTTTCTATTTCTATACTGTGGTTGTAACTCTTGTTAGCCTACCATAGATATCCTTTTTTAATATTGCATGAGATAGTCATTGTGTATTCTTTTTCACTTCTCAGTAAAACACGGTTATCATTATAATTTATTTAATTGAAACATAATTGCTGTCACAAAAGAAAATTTAAAAATTGAAACATACTTACAATAACTTGTAATTCTATTGGTCTATCATTTTGATTTCCAGTTGCTTTCACTGTGTTTTAGGGACGAGAAGATTGTCTGCGGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCTGGTCAGTTTATGTCGACTCAAAATCAGTTCAACGGCGAAGAAGTTGGTATGTCCAGATTGCCTGCTAATCATTATAACCATGACGAAGGAGAAGATGAAGAAGAGGCCGATCAACTTTTCCGAAGGTAATACACTACATTCGATGTTGATTTCAGTATGGAGTGGTGAATAAGCAAACTAAGTAGTGAGTGATATGGTCAATAACAGGTTGCGAAAAGGAAAGGCTTGTGTAAGGCCTGAAGACGAAGAGGATTCTTCAGAGGAGCGGCCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTTGAACGAGCAAACCGTCCAATCATTCGACCTATTGACGAGAAGGTGTCAACGACATTGGAAATACAGCATGGTCAGGGTGTTTCAATACCACCACCACCAGTAAAGCATGCAGAAAGGGAGAAGTTCTTCAAGGATAAAAAAATAGATGTTGGAGTTGGACATATGAGAGGGCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGTAGTGGAAGCATAGATTTCAACGAGTCATGAAGGAGTGGTGTGAAGAAGTGTTTGGGAGTGCAATTTTATTTATTTTCACTTCAACTCATTATTTGTAAAGTTGAGTCATTTTTCTTTCTTTCTTTTCAATGAGTTTGATATCTTTAAATTAAGGTGTAAGGGCCAGGGACTTACTGAATATATCCTTTATTCCATTCGTGTATAATTTTGTAATTTAAAGGTGGTTAACTATTTCAAGTTTGCTGAAGGTGAAAAAAGCCAAAGAAGGGCAATCGAAAGACCTTTATTTTTTTTTTTTTTTATTATAATGCCCGCAAAGACATTTTTTGGTTTGATATTGTTATTTATTTATTTATTTGGACCAGCTGTTATTCTTTCTGCTGCTCCTTTTTTAC ATGCATCTTGTGCTGTCTTCTCGGGACGAGAAGATTGTCTGCGGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCTGGTCAGTTTATGTCGACTCAAAATCAGTTCAACGGCGAAGAAGTTGGTATGTCCAGATTGCCTGCTAATCATTATAACCATGACGAAGGAGAAGATGAAGAAGAGGCCGATCAACTTTTCCGAAGGTTGCGAAAAGGAAAGGCTTGTGTAAGGCCTGAAGACGAAGAGGATTCTTCAGAGGAGCGGCCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTTGAACGAGCAAACCGTCCAATCATTCGACCTATTGACGAGAAGGTGTCAACGACATTGGAAATACAGCATGGTCAGGGTGTTTCAATACCACCACCACCAGTAAAGCATGCAGAAAGGGAGAAGTTCTTCAAGGATAAAAAAATAGATGTTGGAGTTGGACATATGAGAGGGCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGTAGTGGAAGCATAGATTTCAACGAGTCATGA ATGCATCTTGTGCTGTCTTCTCGGGACGAGAAGATTGTCTGCGGTGCCATTGAATTGAATGAGAAGCTCCAAAAGGTCCTTGCAAGACATGATGCCCTCCTCTCTGGTCAGTTTATGTCGACTCAAAATCAGTTCAACGGCGAAGAAGTTGGTATGTCCAGATTGCCTGCTAATCATTATAACCATGACGAAGGAGAAGATGAAGAAGAGGCCGATCAACTTTTCCGAAGGTTGCGAAAAGGAAAGGCTTGTGTAAGGCCTGAAGACGAAGAGGATTCTTCAGAGGAGCGGCCGTCGTTGGGTTTGCTAGGATTGTCAATTCCAGTTGAACGAGCAAACCGTCCAATCATTCGACCTATTGACGAGAAGGTGTCAACGACATTGGAAATACAGCATGGTCAGGGTGTTTCAATACCACCACCACCAGTAAAGCATGCAGAAAGGGAGAAGTTCTTCAAGGATAAAAAAATAGATGTTGGAGTTGGACATATGAGAGGGCTTTCTTTACACAGTCGTAATGCTAGCAGCTCTCGTAGTGGAAGCATAGATTTCAACGAGTCATGA
BLAST of CSPI04G17020.1 vs. TrEMBL
Match: A0A0A0KXZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338940 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 4.0e-100 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TrEMBL
Match: A0A067KK37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09342 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50 Identity = 113/188 (60.11%), Postives = 139/188 (73.94%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TrEMBL
Match: A0A067F6C8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0143901mg PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 3.8e-50 Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TrEMBL
Match: U5GFF3_POPTR (VHS domain-containing family protein OS=Populus trichocarpa GN=POPTR_0004s14580g PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 8.5e-50 Identity = 113/189 (59.79%), Postives = 138/189 (73.02%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TrEMBL
Match: B9IP43_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00820g PE=4 SV=2) HSP 1 Score: 201.4 bits (511), Expect = 9.4e-49 Identity = 112/188 (59.57%), Postives = 136/188 (72.34%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TAIR10
Match: AT5G63640.1 (AT5G63640.1 ENTH/VHS/GAT family protein) HSP 1 Score: 165.2 bits (417), Expect = 3.8e-41 Identity = 106/219 (48.40%), Postives = 134/219 (61.19%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. TAIR10
Match: AT3G08790.1 (AT3G08790.1 ENTH/VHS/GAT family protein) HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06 Identity = 42/164 (25.61%), Postives = 73/164 (44.51%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. NCBI nr
Match: gi|449449813|ref|XP_004142659.1| (PREDICTED: target of Myb protein 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 372.1 bits (954), Expect = 5.8e-100 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. NCBI nr
Match: gi|778694136|ref|XP_011653749.1| (PREDICTED: target of Myb protein 1 isoform X2 [Cucumis sativus]) HSP 1 Score: 372.1 bits (954), Expect = 5.8e-100 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. NCBI nr
Match: gi|700199332|gb|KGN54490.1| (hypothetical protein Csa_4G338940 [Cucumis sativus]) HSP 1 Score: 372.1 bits (954), Expect = 5.8e-100 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. NCBI nr
Match: gi|659069348|ref|XP_008449359.1| (PREDICTED: LOW QUALITY PROTEIN: TOM1-like protein 1 [Cucumis melo]) HSP 1 Score: 362.1 bits (928), Expect = 6.0e-97 Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 1
BLAST of CSPI04G17020.1 vs. NCBI nr
Match: gi|802607792|ref|XP_012073991.1| (PREDICTED: TOM1-like protein 2 [Jatropha curcas]) HSP 1 Score: 206.5 bits (524), Expect = 4.2e-50 Identity = 113/188 (60.11%), Postives = 139/188 (73.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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