CSPI04G12650.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G12650.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 11002633 .. 11003606 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAGAATTACGAACACATCTTCCGCCCCCAATTACCATTTCATCGTCACCTCCCTTTTTGCTTCCTCCCCTCGCTTCACTGCAGCCAAAAGCTTCGTTTCCTCCACCCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTTCCTTTTTTTATTTCCTCTTTTATCTTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTTGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTCTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCTTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGG

mRNA sequence

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA
Homology
[Close]
BLAST of CSPI04G12650.1 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]
BLAST of CSPI04G12650.1 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

The following BLAST results are available for this feature:
BLAST of CSPI04G12650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G12650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0C4_CUCSA2.6e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1[more]
BLAST of CSPI04G12650.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G12650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198874|gb|KGN54032.1|3.7e-37100.00hypothetical protein Csa_4G269150 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G12650CSPI04G12650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G12650.1CSPI04G12650.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G12650.1.utr5p1CSPI04G12650.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G12650.1.cds1CSPI04G12650.1.cds1CDS
CSPI04G12650.1.cds2CSPI04G12650.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G12650.1.utr3p1CSPI04G12650.1.utr3p1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 48..72
scor