CSPI04G10480.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G10480.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 8685844 .. 8686748 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTAGTTGATTGAGTGGAGGAAAAGTGCCTACAACATGCAAAGCTTGGTTTTAGACAAGTAGGAAGTGGCGAAGTCGCCATGCATAGTATAATATTTTAAGATTAGTTCATTTGAAGATTTCTCACAATTCATTCGTGTGTTTTCCCTCAAACCAATTGTAAAAACTTTATGAAAAAGTCTCCTAAACAAAAGAAACGCAAGGAAGGTGGTGTTTGAGTGCAAGGAAGAAGGAAATGTTACAATTACAAGGATTTTGAGTAGTGTGGAGTTTTTTAAGGCTACAAATCCCTTTGAATTTGAAGTTGAAATTTTAAGGTAAAATAGTTAAGATAATTCTAAGTAAGTTTGAAGAAGGAATTTTTTTTTATTTTGATGACTTGAGTAAAGTTTAGAAGCATTTGAAATTGAAAGATATTTTCTAGAAAAATCCAAGATTCTAGGTAAGCTTGAAGGTGGTTGGAGAATCAGGATACGAGGTGCTAGGCGTGAGCACATTTCAAAGGTAAAGAAGTTTTTTTACTTAAGAGTAGGCCCACGGACCAATGTATAACTAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA

mRNA sequence

ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA

Coding sequence (CDS)

ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA
Homology
[Close]
BLAST of CSPI04G10480.1 vs. TrEMBL
Match: A0A0A0L120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G161840 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYLGYLT 60
           MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMY GY+T
Sbjct: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYRGYVT 60

Query: 61  GHAHRECSNAFKERRRESCGQDARHAESEASTWLDIPRACSCRRAACSHGQRLAVP 117
           GH HRECSNAFKERRRESCGQDARHAESEASTWLDI RACSCRRAACSHGQRLAVP
Sbjct: 61  GHEHRECSNAFKERRRESCGQDARHAESEASTWLDILRACSCRRAACSHGQRLAVP 116

[Close]
BLAST of CSPI04G10480.1 vs. NCBI nr
Match: gi|700198678|gb|KGN53836.1| (hypothetical protein Csa_4G161840 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYLGYLT 60
           MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMY GY+T
Sbjct: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYRGYVT 60

Query: 61  GHAHRECSNAFKERRRESCGQDARHAESEASTWLDIPRACSCRRAACSHGQRLAVP 117
           GH HRECSNAFKERRRESCGQDARHAESEASTWLDI RACSCRRAACSHGQRLAVP
Sbjct: 61  GHEHRECSNAFKERRRESCGQDARHAESEASTWLDILRACSCRRAACSHGQRLAVP 116

The following BLAST results are available for this feature:
BLAST of CSPI04G10480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G10480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L120_CUCSA1.7e-5696.55Uncharacterized protein OS=Cucumis sativus GN=Csa_4G161840 PE=4 SV=1[more]
BLAST of CSPI04G10480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G10480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198678|gb|KGN53836.1|2.4e-5696.55hypothetical protein Csa_4G161840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G10480CSPI04G10480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G10480.1CSPI04G10480.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G10480.1.cds1CSPI04G10480.1.cds1CDS
CSPI04G10480.1.cds2CSPI04G10480.1.cds2CDS