CSPI04G10480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G10480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 8685844 .. 8686748 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTAGTTGATTGAGTGGAGGAAAAGTGCCTACAACATGCAAAGCTTGGTTTTAGACAAGTAGGAAGTGGCGAAGTCGCCATGCATAGTATAATATTTTAAGATTAGTTCATTTGAAGATTTCTCACAATTCATTCGTGTGTTTTCCCTCAAACCAATTGTAAAAACTTTATGAAAAAGTCTCCTAAACAAAAGAAACGCAAGGAAGGTGGTGTTTGAGTGCAAGGAAGAAGGAAATGTTACAATTACAAGGATTTTGAGTAGTGTGGAGTTTTTTAAGGCTACAAATCCCTTTGAATTTGAAGTTGAAATTTTAAGGTAAAATAGTTAAGATAATTCTAAGTAAGTTTGAAGAAGGAATTTTTTTTTATTTTGATGACTTGAGTAAAGTTTAGAAGCATTTGAAATTGAAAGATATTTTCTAGAAAAATCCAAGATTCTAGGTAAGCTTGAAGGTGGTTGGAGAATCAGGATACGAGGTGCTAGGCGTGAGCACATTTCAAAGGTAAAGAAGTTTTTTTACTTAAGAGTAGGCCCACGGACCAATGTATAACTAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA

mRNA sequence

ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA

Coding sequence (CDS)

ATGCTTGACATTGAGACAAGCCAAGGAGATGCATGTGAGGAAGGGCTTGCAGCCAAGCTTGTAAGGTTAGCAAGGCGACTTAGTTTGAAGGCTTTGGGGCGAGAAGCTTTGATGCTAGGTGTTTTGAAAAGACACAAGGCATTCAAGGTGGCATGGGATATGTACCTAGGCTATTTGACAGGCCATGCACACAGAGAGTGTTCAAACGCGTTCAAGGAGAGGCGTAGAGAGTCATGTGGCCAAGACGCACGACATGCTGAGAGTGAGGCAAGCACATGGCTAGACATCCCGAGGGCTTGTTCGTGCAGGCGTGCTGCCTGCTCTCATGGCCAGCGGCTAGCTGTGCCATGA

Homology

[Close]

BLAST of CSPI04G10480 vs. TrEMBL
Match: A0A0A0L120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G161840 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYLGYLT 60
           MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMY GY+T
Sbjct: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYRGYVT 60

Query: 61  GHAHRECSNAFKERRRESCGQDARHAESEASTWLDIPRACSCRRAACSHGQRLAVP 117
           GH HRECSNAFKERRRESCGQDARHAESEASTWLDI RACSCRRAACSHGQRLAVP
Sbjct: 61  GHEHRECSNAFKERRRESCGQDARHAESEASTWLDILRACSCRRAACSHGQRLAVP 116

[Close]

BLAST of CSPI04G10480 vs. NCBI nr
Match: gi|700198678|gb|KGN53836.1| (hypothetical protein Csa_4G161840 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYLGYLT 60
           MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMY GY+T
Sbjct: 1   MLDIETSQGDACEEGLAAKLVRLARRLSLKALGREALMLGVLKRHKAFKVAWDMYRGYVT 60

Query: 61  GHAHRECSNAFKERRRESCGQDARHAESEASTWLDIPRACSCRRAACSHGQRLAVP 117
           GH HRECSNAFKERRRESCGQDARHAESEASTWLDI RACSCRRAACSHGQRLAVP
Sbjct: 61  GHEHRECSNAFKERRRESCGQDARHAESEASTWLDILRACSCRRAACSHGQRLAVP 116

The following BLAST results are available for this feature:

BLAST of CSPI04G10480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G10480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L120_CUCSA	1.7e-56	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G161840 PE=4 SV=1	[more]

BLAST of CSPI04G10480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G10480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198678\|gb\|KGN53836.1\|	2.4e-56	96.55	hypothetical protein Csa_4G161840 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10480.1	CSPI04G10480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G10480	Csa4G161840	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G10480	CsaV3_4G011630	Cucumber (Chinese Long) v3	cpicucB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G10480	Melon (DHL92) v3.6.1	cpimedB315
CSPI04G10480	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G10480	Silver-seed gourd	carcpiB0222
CSPI04G10480	Watermelon (97103) v2	cpiwmbB311
CSPI04G10480	Wax gourd	cpiwgoB397
CSPI04G10480	Cucumber (Gy14) v1	cgycpiB553
CSPI04G10480	Cucurbita maxima (Rimu)	cmacpiB681
CSPI04G10480	Cucurbita moschata (Rifu)	cmocpiB674
CSPI04G10480	Melon (DHL92) v3.5.1	cpimeB332
CSPI04G10480	Watermelon (Charleston Gray)	cpiwcgB320
CSPI04G10480	Cucurbita pepo (Zucchini)	cpecpiB069
CSPI04G10480	Bottle gourd (USVL1VR-Ls)	cpilsiB259