CSPI04G08600.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08600.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 6372059 .. 6372676 (-)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTTGATGATCAATTTCAAGTTGCGGTTATTATTAATAAATTACCTCATCTATGGAAGGATTTAAAAAATACTCTAAGGCACAAAACCAAGGAGTTCTCGTTGGAAAGCCTCATCACATGATTAAGGATTGAGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCCGAAAACTTAGCTAAAAATTGTAGAAATAGGAAGTGTTCTGCTGCGCAGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

mRNA sequence

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

Coding sequence (CDS)

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

Homology

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BLAST of CSPI04G08600.1 vs. TrEMBL
Match: Q0KIN7_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 47  CEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRN 106
           C F K+     PQ    AN+ E+ +VA+I ++N++   +GWW D+GA+RHVC++   F+ 
Sbjct: 276 CRFRKRG--PNPQ----ANVTEEPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKK 335

Query: 107 YNEIKD-KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           Y   ++ K I LGD+HT +V G  +VEL FT+G+ L
Sbjct: 336 YTHFEEPKTIMLGDSHTTQVLGTGDVELCFTSGRVL 365

[Close]

BLAST of CSPI04G08600.1 vs. TrEMBL
Match: Q60D13_SOLDE (Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 47  CEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRN 106
           C F K+     PQ    AN+ E+ +VA+I ++N++   +GWW+D+GA+RHVC++   F+ 
Sbjct: 123 CRFRKRG--PNPQ----ANVTEEPFVAVITDINMVENVDGWWVDSGANRHVCYDKDWFKK 182

Query: 107 YNEIKD-KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           Y   ++ K I LGD HT +V G  +VEL F++G+ L
Sbjct: 183 YTHFEEPKTIMLGDAHTTQVLGKGDVELCFSSGREL 212

[Close]

BLAST of CSPI04G08600.1 vs. TrEMBL
Match: A0A151TB57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018882 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 6   QFQVAEEARRHDQKEEV----NAIPRKKSNTVLKPDL------KPKGNQMKCEFNKQNNL 65
           Q Q     +R+DQK+      N+ PR  +N V K         KP  +  +C F    N 
Sbjct: 232 QVQEQPNKKRYDQKKNKYNSKNSFPRA-TNPVFKKKGNCFVCGKPGHHAPQCRFRATRND 291

Query: 66  QRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD--K 125
             P+++      +D   A++ +VN++     W +D+GA+RH+C N ++F +Y  ++D  +
Sbjct: 292 NPPKAKVNLAEGDDIIAAVVSQVNIVTNVSKWVVDSGATRHICANRNVFSSYTAVEDGEE 351

Query: 126 NIFLGDNHTIKVAGVREVELKFTTGKTL 142
            ++LGD+ T  V G  +V +K T+GKTL
Sbjct: 352 QVYLGDSRTTPVLGKGKVLIKLTSGKTL 378

[Close]

BLAST of CSPI04G08600.1 vs. TrEMBL
Match: Q69FA4_PHAVU (Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1


Query: 14  RRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTA--------N 73
           ++ D K++ N    + S T   P  K KGN   C    +     PQ R  A        N
Sbjct: 244 KKFDHKKKPNNKFSRPSGT--NPTFKKKGNCFVCG---KPGHHAPQCRHRAKNDYPPKAN 303

Query: 74  LVE--DEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD--KNIFLGDNH 133
           L E  D  VA++ +VN++     W +D+GA+RH+C N ++F +Y  + D  + ++LGD+ 
Sbjct: 304 LAEGEDTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSR 363

Query: 134 TIKVAGVREVELKFTTGKTL 142
           T  V G  +V LK T+GKTL
Sbjct: 364 TTPVLGKGKVLLKLTSGKTL 378

[Close]

BLAST of CSPI04G08600.1 vs. TrEMBL
Match: A0A0K9R167_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_118610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-09
Identity = 31/89 (34.83%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 56  QRPQSRSTANLVEDE--YVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD- 115
           ++ Q++S A+L ED+   +A + E+N++     W +DTGA++H C N  LF N+ E  + 
Sbjct: 58  KQDQNKSQAHLTEDQNGIIAAVAELNLVCNKADWIIDTGATKHFCANKELFENFEEAANG 117

Query: 116 KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           + +F+G++ + +V G  ++ LK  +GKTL
Sbjct: 118 EQVFMGNSSSAEVIGKGKISLKLNSGKTL 146

[Close]

BLAST of CSPI04G08600.1 vs. NCBI nr
Match: gi|657953937|ref|XP_008365345.1| (PREDICTED: uncharacterized protein LOC103428983, partial [Malus domestica])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-20
Identity = 45/86 (52.33%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 57  RPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIF 116
           +  S S ANLVE + +AM+ E+NV+ G++GWW+DTGASRHVC++ SLF+ Y   K + + 
Sbjct: 300 KANSVSQANLVEKQLIAMVSEINVVDGSKGWWVDTGASRHVCYDRSLFKTYYVAKGRKVL 359

Query: 117 LGDNHTIKVAGVREVELKFTTGKTLV 143
           LGD+H+  VAG  EVEL+F +GKT++
Sbjct: 360 LGDSHSTDVAGTGEVELRFISGKTMI 385

[Close]

BLAST of CSPI04G08600.1 vs. NCBI nr
Match: gi|502178576|ref|XP_004516287.1| (PREDICTED: uncharacterized protein LOC101500428 [Cicer arietinum])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 64  ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTI 123
           ANL E+++VAMI E+N++ G++GWW+DTG SRHVC++  +F+ Y   +DK + L D+HT 
Sbjct: 196 ANLTEEQFVAMITEINLVGGSDGWWIDTGVSRHVCYDRVMFKTYTAAEDKKMLLRDSHTT 255

Query: 124 KVAGVREVELKFTTGKTLV 143
            VAG+ +VEL FT GKTL+
Sbjct: 256 NVAGIGDVELTFTLGKTLI 274

[Close]

BLAST of CSPI04G08600.1 vs. NCBI nr
Match: gi|658020195|ref|XP_008345474.1| (PREDICTED: uncharacterized protein LOC103408396 [Malus domestica])

HSP 1 Score: 102.4 bits (254), Expect = 6.5e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 52  QNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIK 111
           Q+ +      S ANLV+++ +AM+ E+N++ G+EGWW+DTGA RHVC++ SLF+ Y   +
Sbjct: 75  QSAMDSENPASQANLVKEQLIAMMSEINLVDGSEGWWVDTGAFRHVCYDHSLFKTYYVTE 134

Query: 112 DKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
            + + LGD+H+  V G  EVELKFT GKT++
Sbjct: 135 GRKVLLGDSHSTBVVGTGEVELKFTCGKTMI 165

[Close]

BLAST of CSPI04G08600.1 vs. NCBI nr
Match: gi|571447932|ref|XP_006577615.1| (PREDICTED: uncharacterized protein LOC102665777 [Glycine max])

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 54/147 (36.73%), Postives = 93/147 (63.27%), Query Frame = 1


Query: 1   MSLDDQFQVAE--EARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRP 60
           M+LD+QFQVA   +      K+  N +  K     L+  +     +++ E   +   Q+ 
Sbjct: 119 MALDEQFQVAVIIDKLPPGWKDFKNLLRHKTKEFSLESLI----TRLRIEEEARRQDQKD 178

Query: 61  QSRSTAN---LVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNI 120
           +  + ++   + ++ Y+A+I E+N+I G++GWW+DTGASRHVC++ ++F+ Y  +++K +
Sbjct: 179 EVLTVSHNNTMTQEPYIAVITEINMIGGSDGWWVDTGASRHVCYDRAMFKTYMNVENKKV 238

Query: 121 FLGDNHTIKVAGVREVELKFTTGKTLV 143
            LGD+HT  VAG  +VELKFT+GKTL+
Sbjct: 239 LLGDSHTTIVAGTGDVELKFTSGKTLI 261

[Close]

BLAST of CSPI04G08600.1 vs. NCBI nr
Match: gi|502147233|ref|XP_004506705.1| (PREDICTED: uncharacterized protein LOC101514820 [Cicer arietinum])

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-18
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 47  CEFNKQNNLQRPQSRST-----ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL 106
           C   K+ ++ R     +     ANL E++ VAMI E+N++ G++GWW++TGAS HVC++ 
Sbjct: 158 CRCGKEGHMARKCMNKSGLANQANLTEEQLVAMITEINLVGGSDGWWIETGASHHVCYDR 217

Query: 107 SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           ++F+ Y  ++DK + LGD+HT  V  + +VEL FT+ KTL+
Sbjct: 218 AMFKTYTAVEDKKVLLGDSHTTNVVVIGDVELIFTSRKTLI 258

The following BLAST results are available for this feature:

BLAST of CSPI04G08600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q0KIN7_SOLDE	2.0e-14	41.67	Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1	[more]
Q60D13_SOLDE	1.7e-13	40.63	Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010...	[more]
A0A151TB57_CAJCA	1.0e-10	31.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
Q69FA4_PHAVU	1.9e-09	34.29	Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1	[more]
A0A0K9R167_SPIOL	9.5e-09	34.83	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_118610 PE=4 SV=1	[more]

BLAST of CSPI04G08600.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G08600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657953937\|ref\|XP_008365345.1\|	3.4e-20	52.33	PREDICTED: uncharacterized protein LOC103428983, partial [Malus domestica]	[more]
gi\|502178576\|ref\|XP_004516287.1\|	1.7e-19	53.16	PREDICTED: uncharacterized protein LOC101500428 [Cicer arietinum]	[more]
gi\|658020195\|ref\|XP_008345474.1\|	6.5e-19	47.25	PREDICTED: uncharacterized protein LOC103408396 [Malus domestica]	[more]
gi\|571447932\|ref\|XP_006577615.1\|	8.5e-19	36.73	PREDICTED: uncharacterized protein LOC102665777 [Glycine max]	[more]
gi\|502147233\|ref\|XP_004506705.1\|	7.2e-18	41.58	PREDICTED: uncharacterized protein LOC101514820 [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G08600	CSPI04G08600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G08600.1	CSPI04G08600.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G08600.1.cds3	CSPI04G08600.1.cds3	CDS
CSPI04G08600.1.cds2	CSPI04G08600.1.cds2	CDS
CSPI04G08600.1.cds1	CSPI04G08600.1.cds1	CDS