CSPI04G08600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G08600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 6372059 .. 6372676 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTGATGATCAATTTCAAGTTGCGGTTATTATTAATAAATTACCTCATCTATGGAAGGATTTAAAAAATACTCTAAGGCACAAAACCAAGGAGTTCTCGTTGGAAAGCCTCATCACATGATTAAGGATTGAGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCCGAAAACTTAGCTAAAAATTGTAGAAATAGGAAGTGTTCTGCTGCGCAGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

mRNA sequence

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

Coding sequence (CDS)

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG
Homology
[Close]
BLAST of CSPI04G08600 vs. TrEMBL
Match: Q0KIN7_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 47  CEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRN 106
           C F K+     PQ    AN+ E+ +VA+I ++N++   +GWW D+GA+RHVC++   F+ 
Sbjct: 276 CRFRKRG--PNPQ----ANVTEEPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKK 335

Query: 107 YNEIKD-KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           Y   ++ K I LGD+HT +V G  +VEL FT+G+ L
Sbjct: 336 YTHFEEPKTIMLGDSHTTQVLGTGDVELCFTSGRVL 365

[Close]
BLAST of CSPI04G08600 vs. TrEMBL
Match: Q60D13_SOLDE (Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 47  CEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRN 106
           C F K+     PQ    AN+ E+ +VA+I ++N++   +GWW+D+GA+RHVC++   F+ 
Sbjct: 123 CRFRKRG--PNPQ----ANVTEEPFVAVITDINMVENVDGWWVDSGANRHVCYDKDWFKK 182

Query: 107 YNEIKD-KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           Y   ++ K I LGD HT +V G  +VEL F++G+ L
Sbjct: 183 YTHFEEPKTIMLGDAHTTQVLGKGDVELCFSSGREL 212

[Close]
BLAST of CSPI04G08600 vs. TrEMBL
Match: A0A151TB57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018882 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 1 

Query: 6   QFQVAEEARRHDQKEEV----NAIPRKKSNTVLKPDL------KPKGNQMKCEFNKQNNL 65
           Q Q     +R+DQK+      N+ PR  +N V K         KP  +  +C F    N 
Sbjct: 232 QVQEQPNKKRYDQKKNKYNSKNSFPRA-TNPVFKKKGNCFVCGKPGHHAPQCRFRATRND 291

Query: 66  QRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD--K 125
             P+++      +D   A++ +VN++     W +D+GA+RH+C N ++F +Y  ++D  +
Sbjct: 292 NPPKAKVNLAEGDDIIAAVVSQVNIVTNVSKWVVDSGATRHICANRNVFSSYTAVEDGEE 351

Query: 126 NIFLGDNHTIKVAGVREVELKFTTGKTL 142
            ++LGD+ T  V G  +V +K T+GKTL
Sbjct: 352 QVYLGDSRTTPVLGKGKVLIKLTSGKTL 378

[Close]
BLAST of CSPI04G08600 vs. TrEMBL
Match: Q69FA4_PHAVU (Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1 

Query: 14  RRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTA--------N 73
           ++ D K++ N    + S T   P  K KGN   C    +     PQ R  A        N
Sbjct: 244 KKFDHKKKPNNKFSRPSGT--NPTFKKKGNCFVCG---KPGHHAPQCRHRAKNDYPPKAN 303

Query: 74  LVE--DEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD--KNIFLGDNH 133
           L E  D  VA++ +VN++     W +D+GA+RH+C N ++F +Y  + D  + ++LGD+ 
Sbjct: 304 LAEGEDTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSR 363

Query: 134 TIKVAGVREVELKFTTGKTL 142
           T  V G  +V LK T+GKTL
Sbjct: 364 TTPVLGKGKVLLKLTSGKTL 378

[Close]
BLAST of CSPI04G08600 vs. TrEMBL
Match: A0A0K9R167_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_118610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-09
Identity = 31/89 (34.83%), Postives = 57/89 (64.04%), Query Frame = 1 

Query: 56  QRPQSRSTANLVEDE--YVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKD- 115
           ++ Q++S A+L ED+   +A + E+N++     W +DTGA++H C N  LF N+ E  + 
Sbjct: 58  KQDQNKSQAHLTEDQNGIIAAVAELNLVCNKADWIIDTGATKHFCANKELFENFEEAANG 117

Query: 116 KNIFLGDNHTIKVAGVREVELKFTTGKTL 142
           + +F+G++ + +V G  ++ LK  +GKTL
Sbjct: 118 EQVFMGNSSSAEVIGKGKISLKLNSGKTL 146

[Close]
BLAST of CSPI04G08600 vs. NCBI nr
Match: gi|657953937|ref|XP_008365345.1| (PREDICTED: uncharacterized protein LOC103428983, partial [Malus domestica])

HSP 1 Score: 106.7 bits (265), Expect = 3.4e-20
Identity = 45/86 (52.33%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 57  RPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIF 116
           +  S S ANLVE + +AM+ E+NV+ G++GWW+DTGASRHVC++ SLF+ Y   K + + 
Sbjct: 300 KANSVSQANLVEKQLIAMVSEINVVDGSKGWWVDTGASRHVCYDRSLFKTYYVAKGRKVL 359

Query: 117 LGDNHTIKVAGVREVELKFTTGKTLV 143
           LGD+H+  VAG  EVEL+F +GKT++
Sbjct: 360 LGDSHSTDVAGTGEVELRFISGKTMI 385

[Close]
BLAST of CSPI04G08600 vs. NCBI nr
Match: gi|502178576|ref|XP_004516287.1| (PREDICTED: uncharacterized protein LOC101500428 [Cicer arietinum])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 64  ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTI 123
           ANL E+++VAMI E+N++ G++GWW+DTG SRHVC++  +F+ Y   +DK + L D+HT 
Sbjct: 196 ANLTEEQFVAMITEINLVGGSDGWWIDTGVSRHVCYDRVMFKTYTAAEDKKMLLRDSHTT 255

Query: 124 KVAGVREVELKFTTGKTLV 143
            VAG+ +VEL FT GKTL+
Sbjct: 256 NVAGIGDVELTFTLGKTLI 274

[Close]
BLAST of CSPI04G08600 vs. NCBI nr
Match: gi|658020195|ref|XP_008345474.1| (PREDICTED: uncharacterized protein LOC103408396 [Malus domestica])

HSP 1 Score: 102.4 bits (254), Expect = 6.5e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 52  QNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIK 111
           Q+ +      S ANLV+++ +AM+ E+N++ G+EGWW+DTGA RHVC++ SLF+ Y   +
Sbjct: 75  QSAMDSENPASQANLVKEQLIAMMSEINLVDGSEGWWVDTGAFRHVCYDHSLFKTYYVTE 134

Query: 112 DKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
            + + LGD+H+  V G  EVELKFT GKT++
Sbjct: 135 GRKVLLGDSHSTBVVGTGEVELKFTCGKTMI 165

[Close]
BLAST of CSPI04G08600 vs. NCBI nr
Match: gi|571447932|ref|XP_006577615.1| (PREDICTED: uncharacterized protein LOC102665777 [Glycine max])

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 54/147 (36.73%), Postives = 93/147 (63.27%), Query Frame = 1 

Query: 1   MSLDDQFQVAE--EARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRP 60
           M+LD+QFQVA   +      K+  N +  K     L+  +     +++ E   +   Q+ 
Sbjct: 119 MALDEQFQVAVIIDKLPPGWKDFKNLLRHKTKEFSLESLI----TRLRIEEEARRQDQKD 178

Query: 61  QSRSTAN---LVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNI 120
           +  + ++   + ++ Y+A+I E+N+I G++GWW+DTGASRHVC++ ++F+ Y  +++K +
Sbjct: 179 EVLTVSHNNTMTQEPYIAVITEINMIGGSDGWWVDTGASRHVCYDRAMFKTYMNVENKKV 238

Query: 121 FLGDNHTIKVAGVREVELKFTTGKTLV 143
            LGD+HT  VAG  +VELKFT+GKTL+
Sbjct: 239 LLGDSHTTIVAGTGDVELKFTSGKTLI 261

[Close]
BLAST of CSPI04G08600 vs. NCBI nr
Match: gi|502147233|ref|XP_004506705.1| (PREDICTED: uncharacterized protein LOC101514820 [Cicer arietinum])

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-18
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 47  CEFNKQNNLQRPQSRST-----ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNL 106
           C   K+ ++ R     +     ANL E++ VAMI E+N++ G++GWW++TGAS HVC++ 
Sbjct: 158 CRCGKEGHMARKCMNKSGLANQANLTEEQLVAMITEINLVGGSDGWWIETGASHHVCYDR 217

Query: 107 SLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           ++F+ Y  ++DK + LGD+HT  V  + +VEL FT+ KTL+
Sbjct: 218 AMFKTYTAVEDKKVLLGDSHTTNVVVIGDVELIFTSRKTLI 258

The following BLAST results are available for this feature:
BLAST of CSPI04G08600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G08600 vs. TrEMBL
Match NameE-valueIdentityDescription
Q0KIN7_SOLDE2.0e-1441.67Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1[more]
Q60D13_SOLDE1.7e-1340.63Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010... [more]
A0A151TB57_CAJCA1.0e-1031.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
Q69FA4_PHAVU1.9e-0934.29Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1[more]
A0A0K9R167_SPIOL9.5e-0934.83Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_118610 PE=4 SV=1[more]
BLAST of CSPI04G08600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G08600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657953937|ref|XP_008365345.1|3.4e-2052.33PREDICTED: uncharacterized protein LOC103428983, partial [Malus domestica][more]
gi|502178576|ref|XP_004516287.1|1.7e-1953.16PREDICTED: uncharacterized protein LOC101500428 [Cicer arietinum][more]
gi|658020195|ref|XP_008345474.1|6.5e-1947.25PREDICTED: uncharacterized protein LOC103408396 [Malus domestica][more]
gi|571447932|ref|XP_006577615.1|8.5e-1936.73PREDICTED: uncharacterized protein LOC102665777 [Glycine max][more]
gi|502147233|ref|XP_004506705.1|7.2e-1841.58PREDICTED: uncharacterized protein LOC101514820 [Cicer arietinum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08600.1CSPI04G08600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G08600Wax gourdcpiwgoB362
CSPI04G08600Cucumber (Gy14) v1cgycpiB411
CSPI04G08600Watermelon (97103) v1cpiwmB323
CSPI04G08600Cucurbita maxima (Rimu)cmacpiB475
CSPI04G08600Cucurbita moschata (Rifu)cmocpiB464
CSPI04G08600Cucumber (Chinese Long) v2cpicuB182
CSPI04G08600Melon (DHL92) v3.5.1cpimeB298
CSPI04G08600Watermelon (Charleston Gray)cpiwcgB285
CSPI04G08600Watermelon (97103) v1cpiwmB295
CSPI04G08600Bottle gourd (USVL1VR-Ls)cpilsiB281
CSPI04G08600Bottle gourd (USVL1VR-Ls)cpilsiB308
CSPI04G08600Melon (DHL92) v3.6.1cpimedB292
CSPI04G08600Cucumber (Gy14) v2cgybcpiB168
CSPI04G08600Silver-seed gourdcarcpiB0735
CSPI04G08600Cucumber (Chinese Long) v3cpicucB213
CSPI04G08600Watermelon (97103) v2cpiwmbB283