CSPI04G08460.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAGGAGGCAGAGCGAATTACTTGGAGACATGATGTGTATTGATTACTGATGGGTATGGCTCTGCCTCCGTCGACGAATCAACGGAGGCAGACGAGCGGAGATGTGATGGCTAGAATCCTATAAGGCGAAAACCCTAGAGCTCTGATACCATGTTGATTTTATGGAATTAATCTATATTTCAT ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAG ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAG
BLAST of CSPI04G08460.1 vs. TrEMBL
Match: L8GLS9_ACACA (Uncharacterized protein OS=Acanthamoeba castellanii str. Neff GN=ACA1_076470 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26 Identity = 97/188 (51.60%), Postives = 102/188 (54.26%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. TrEMBL
Match: A0A0S1FMM6_BATGR (Zinc finger protein 36 C3H type-like 3 OS=Batomys granti GN=Zfp36l3 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22 Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. TrEMBL
Match: A0A0S1FMM2_APODA (Zinc finger protein 36 C3H type-like 3 OS=Apomys datae GN=Zfp36l3 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20 Identity = 101/206 (49.03%), Postives = 113/206 (54.85%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. TrEMBL
Match: U1HZZ8_ENDPU (Uncharacterized protein OS=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) GN=EPUS_06179 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19 Identity = 127/213 (59.62%), Postives = 130/213 (61.03%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. TrEMBL
Match: A7S8Y3_NEMVE (Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g28036 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 8.8e-19 Identity = 91/187 (48.66%), Postives = 124/187 (66.31%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. NCBI nr
Match: gi|929332586|ref|XP_014040752.1| (PREDICTED: collagen EMF1-alpha-like [Salmo salar]) HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34 Identity = 123/279 (44.09%), Postives = 206/279 (73.84%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. NCBI nr
Match: gi|470404521|ref|XP_004335807.1| (hypothetical protein ACA1_076470 [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 127.9 bits (320), Expect = 2.8e-26 Identity = 97/188 (51.60%), Postives = 102/188 (54.26%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. NCBI nr
Match: gi|940836683|gb|ALK28645.1| (zinc finger protein 36 C3H type-like 3 [Batomys granti]) HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22 Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. NCBI nr
Match: gi|908422775|ref|XP_013072769.1| (PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Biomphalaria glabrata]) HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21 Identity = 72/140 (51.43%), Postives = 121/140 (86.43%), Query Frame = 1
BLAST of CSPI04G08460.1 vs. NCBI nr
Match: gi|940836673|gb|ALK28640.1| (zinc finger protein 36 C3H type-like 3 [Apomys datae]) HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20 Identity = 101/206 (49.03%), Postives = 113/206 (54.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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