CSPI04G08460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G08460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionZinc finger protein 36 C3H type-like 3
LocationChr4 : 6207804 .. 6208810 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAGGAGGCAGAGCGAATTACTTGGAGACATGATGTGTATTGATTACTGATGGGTATGGCTCTGCCTCCGTCGACGAATCAACGGAGGCAGACGAGCGGAGATGTGATGGCTAGAATCCTATAAGGCGAAAACCCTAGAGCTCTGATACCATGTTGATTTTATGGAATTAATCTATATTTCAT

mRNA sequence

ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAG

Coding sequence (CDS)

ATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGGCGGAAGGAGCAGTGATGACGGAAGGAGTAATGGCGGCGGCAGAATCAAAGATGAGGATTTTGATCTAG
Homology
[Close]
BLAST of CSPI04G08460 vs. TrEMBL
Match: L8GLS9_ACACA (Uncharacterized protein OS=Acanthamoeba castellanii str. Neff GN=ACA1_076470 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 97/188 (51.60%), Postives = 102/188 (54.26%), Query Frame = 1 

Query: 85  MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 144
           M EGAVM EGAV  EG  M EG +M E A M +GAVM EG    EG    EG V  EG  
Sbjct: 1   MVEGAVMVEGAVTVEGTAMVEGVMMVEDAAMVDGAVMVEGTATVEGTATVEGTVTVEGTE 60

Query: 145 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 204
             EG VM EG V  EGAV  EG    EG VM EG VM EG VM EG    EGAVM EG  
Sbjct: 61  TVEGTVMVEGMVTVEGAVTVEGTATVEGMVMVEGVVMVEGVVMVEGTATVEGAVMVEGTA 120

Query: 205 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMTEGVM 264
             EG    EG    EG VM EG V  EG VM EG    EG    EGAV  E AVM +GV+
Sbjct: 121 TVEGTATVEGTETVEGTVMVEGMVTVEGTVMVEGTATVEGTATVEGAVTVEDAVMVDGVV 180

Query: 265 AAAESKMR 273
              E  +R
Sbjct: 181 MVVEFCVR 188

[Close]
BLAST of CSPI04G08460 vs. TrEMBL
Match: A0A0S1FMM6_BATGR (Zinc finger protein 36 C3H type-like 3 OS=Batomys granti GN=Zfp36l3 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 1 

Query: 1   MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 60
           +A GA +A GA  A    +A GA +  GA +A  A +A GA +  G  +A  A +A GA 
Sbjct: 379 LARGAALAPGAAFAPATALAPGAALNHGAALAPAAALARGAALTPGTALAPAAALARGAA 438

Query: 61  MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 120
           +  G  +A  A +A GA +  G  +A  A +A GA +A  A +A GA +A GA +A G  
Sbjct: 439 LTPGTALAPAAALARGAALVPGTALAPAAALARGAALAPEAALAPGAALARGAALAPGTA 498

Query: 121 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 180
           +A  A +A GA +A GA +A  A +A GA +  G  +A GA +A GA +A GA +A GA 
Sbjct: 499 LAPAAALARGAALAPGAALAPAAALARGAALVPGTALAPGAAVARGAALAPGAALAPGAA 558

Query: 181 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 240
           +  GAV A GA  A GA  A GA +A GA +  GA +  G  +A    ++ G  +A GA 
Sbjct: 559 LVPGAVFASGAAFAHGAAFAPGAALAPGAALDPGAAVVPGTTIAPEPAISPGVALAPGAA 618

Query: 241 MAEGAVMAEGAVMAEGAVMTEGVMAAA 268
           +A    +A G  +A G  +  GV  A+
Sbjct: 619 IAPRISIAPGIAIAPGVAIAPGVTTAS 645

[Close]
BLAST of CSPI04G08460 vs. TrEMBL
Match: A0A0S1FMM2_APODA (Zinc finger protein 36 C3H type-like 3 OS=Apomys datae GN=Zfp36l3 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 101/206 (49.03%), Postives = 113/206 (54.85%), Query Frame = 1 

Query: 5   AVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV-MAEGAVMAEGAVMAEGAVMAEGAVMAE 64
           A +A GA +A GA MA  A MA GA MA GA  MA GA +A GA MA GA MA GA M  
Sbjct: 342 AAIAPGAALAPGAAMALRAAMATGAAMATGAATMAPGAALALGAAMAAGAAMAPGAAMPP 401

Query: 65  GAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAE 124
           GA M  GA +  GA +A GA MA GA    GA +A GA +A GA +A GA  A GA MA 
Sbjct: 402 GAAMPPGAALTPGAALALGAAMAAGASFTPGAALAPGAALARGAALARGAAFAPGAAMAP 461

Query: 125 GAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAE 184
           GA  A GA MA GA  A GA MA GA  + GA  A GA    GA    GA  A GA    
Sbjct: 462 GAAFARGAAMAPGAAFARGAAMAPGAAFSRGAAFARGAAFPRGAAFPRGAAFARGAAFPP 521

Query: 185 GAVMAEGAVMAEGAVMAEGAVMAEGA 210
           GA MA    +  G   A   ++A GA
Sbjct: 522 GAGMAPRVAVPPGFASASTGLLAPGA 547

[Close]
BLAST of CSPI04G08460 vs. TrEMBL
Match: U1HZZ8_ENDPU (Uncharacterized protein OS=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) GN=EPUS_06179 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 127/213 (59.62%), Postives = 130/213 (61.03%), Query Frame = 1 

Query: 15  EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMA 74
           EGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  A
Sbjct: 10  EGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGA 69

Query: 75  EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMA 134
           EGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  AEGA  A
Sbjct: 70  EGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGA 129

Query: 135 EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMA 194
           EGA  AEGA  AEGA  AEGA  AEGA  AEGA   E A  AEG  + E A  AE A +A
Sbjct: 130 EGAEGAEGAEGAEGAEGAEGAEGAEGAEGAEGADSVEFAGRAEGVELIELAKFAEDAELA 189

Query: 195 EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGA 228
           EG   AE    AE A       + E A  AEGA
Sbjct: 190 EG---AEDVKFAEFAERVSSVKLTENAKFAEGA 219

[Close]
BLAST of CSPI04G08460 vs. TrEMBL
Match: A7S8Y3_NEMVE (Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g28036 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.8e-19
Identity = 91/187 (48.66%), Postives = 124/187 (66.31%), Query Frame = 1 

Query: 75  EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMA 134
           +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  
Sbjct: 5   DGAVYEDGAVYKDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYE 64

Query: 135 EGAVMAEG-AVMA--EGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGA 194
           +GAV  +  ++M+  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GA
Sbjct: 65  DGAVYEDDFSIMSYEDGAVYEDGAVYKDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGA 124

Query: 195 VMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGA 254
           V  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV  +GAV   GAV  +GA
Sbjct: 125 VYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEDGAVYEGGAVYEDGA 184

Query: 255 VMAEGAV 259
           V  +GAV
Sbjct: 185 VYEDGAV 191

[Close]
BLAST of CSPI04G08460 vs. NCBI nr
Match: gi|929332586|ref|XP_014040752.1| (PREDICTED: collagen EMF1-alpha-like [Salmo salar])

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 123/279 (44.09%), Postives = 206/279 (73.84%), Query Frame = 1 

Query: 2   AEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVM------------------ 61
           ++GAV ++GAV ++GAV ++GAV ++GAV ++GAV+++GA +                  
Sbjct: 86  SKGAVGSKGAVGSKGAVGSKGAVGSKGAVFSKGAVVSKGAWLCPLKVLWSLAVSSKGTWD 145

Query: 62  AEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVM 121
           ++GAV ++GAV  +GAV ++GAV ++GAV ++GAV  +GAV  +GA +++GAV ++GAV 
Sbjct: 146 SKGAVFSKGAVFTKGAVSSKGAVSSKGAVSSKGAVSTKGAVFTKGAWVSKGAVFSKGAVF 205

Query: 122 AEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVM 181
           ++GAV  +GAV ++GAV ++GA +++GAV+ +GAV ++GA +++GAV ++GAV  +G  +
Sbjct: 206 SKGAVFTKGAVFSKGAVFSKGAWVSKGAVLTKGAVFSKGAWVSKGAVFSKGAVFTKGTWV 265

Query: 182 AEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVM 241
           ++GAV ++GAV  +GAV  +GAV ++GAV  +GAV ++GAV  + AV ++GAV ++GAV 
Sbjct: 266 SKGAVFSKGAVFTKGAVFTKGAVFSKGAVFTKGAVFSKGAVFTKVAVFSKGAVFSKGAVF 325

Query: 242 AEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMTEG 263
            +GA +++GAV ++GAV  +GAV ++GAV ++GAV T+G
Sbjct: 326 TKGAWVSKGAVFSKGAVFTKGAVFSKGAVFSKGAVFTKG 364

[Close]
BLAST of CSPI04G08460 vs. NCBI nr
Match: gi|470404521|ref|XP_004335807.1| (hypothetical protein ACA1_076470 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 127.9 bits (320), Expect = 2.8e-26
Identity = 97/188 (51.60%), Postives = 102/188 (54.26%), Query Frame = 1 

Query: 85  MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 144
           M EGAVM EGAV  EG  M EG +M E A M +GAVM EG    EG    EG V  EG  
Sbjct: 1   MVEGAVMVEGAVTVEGTAMVEGVMMVEDAAMVDGAVMVEGTATVEGTATVEGTVTVEGTE 60

Query: 145 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 204
             EG VM EG V  EGAV  EG    EG VM EG VM EG VM EG    EGAVM EG  
Sbjct: 61  TVEGTVMVEGMVTVEGAVTVEGTATVEGMVMVEGVVMVEGVVMVEGTATVEGAVMVEGTA 120

Query: 205 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMTEGVM 264
             EG    EG    EG VM EG V  EG VM EG    EG    EGAV  E AVM +GV+
Sbjct: 121 TVEGTATVEGTETVEGTVMVEGMVTVEGTVMVEGTATVEGTATVEGAVTVEDAVMVDGVV 180

Query: 265 AAAESKMR 273
              E  +R
Sbjct: 181 MVVEFCVR 188

[Close]
BLAST of CSPI04G08460 vs. NCBI nr
Match: gi|940836683|gb|ALK28645.1| (zinc finger protein 36 C3H type-like 3 [Batomys granti])

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 1 

Query: 1   MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 60
           +A GA +A GA  A    +A GA +  GA +A  A +A GA +  G  +A  A +A GA 
Sbjct: 379 LARGAALAPGAAFAPATALAPGAALNHGAALAPAAALARGAALTPGTALAPAAALARGAA 438

Query: 61  MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 120
           +  G  +A  A +A GA +  G  +A  A +A GA +A  A +A GA +A GA +A G  
Sbjct: 439 LTPGTALAPAAALARGAALVPGTALAPAAALARGAALAPEAALAPGAALARGAALAPGTA 498

Query: 121 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 180
           +A  A +A GA +A GA +A  A +A GA +  G  +A GA +A GA +A GA +A GA 
Sbjct: 499 LAPAAALARGAALAPGAALAPAAALARGAALVPGTALAPGAAVARGAALAPGAALAPGAA 558

Query: 181 MAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV 240
           +  GAV A GA  A GA  A GA +A GA +  GA +  G  +A    ++ G  +A GA 
Sbjct: 559 LVPGAVFASGAAFAHGAAFAPGAALAPGAALDPGAAVVPGTTIAPEPAISPGVALAPGAA 618

Query: 241 MAEGAVMAEGAVMAEGAVMTEGVMAAA 268
           +A    +A G  +A G  +  GV  A+
Sbjct: 619 IAPRISIAPGIAIAPGVAIAPGVTTAS 645

[Close]
BLAST of CSPI04G08460 vs. NCBI nr
Match: gi|908422775|ref|XP_013072769.1| (PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Biomphalaria glabrata])

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21
Identity = 72/140 (51.43%), Postives = 121/140 (86.43%), Query Frame = 1 

Query: 120 VMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGA 179
           ++A+G V+A+G V+A+G V+A+GAV+A+GAV+A+G V+A+G ++A+G V+A+G V+A+ A
Sbjct: 1   MVADGTVVADGTVVADGTVVADGAVVADGAVVADGTVVADGTLVADGTVVADGTVVADDA 60

Query: 180 VMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGA 239
           V+A+ AV+A+G V+A+G V+ +G V+A+GAV+A+G V+A+GAV+AEG V+A+GAV+A+G 
Sbjct: 61  VVADEAVVADGDVVADGTVVDDGTVVADGAVVADGTVVADGAVVAEGTVVADGAVVADGT 120

Query: 240 VMAEGAVMAEGAVMAEGAVM 260
           ++A+G V+A+ AV+A+ AV+
Sbjct: 121 LVADGTVVADDAVVADEAVL 140

[Close]
BLAST of CSPI04G08460 vs. NCBI nr
Match: gi|940836673|gb|ALK28640.1| (zinc finger protein 36 C3H type-like 3 [Apomys datae])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 101/206 (49.03%), Postives = 113/206 (54.85%), Query Frame = 1 

Query: 5   AVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAV-MAEGAVMAEGAVMAEGAVMAEGAVMAE 64
           A +A GA +A GA MA  A MA GA MA GA  MA GA +A GA MA GA MA GA M  
Sbjct: 342 AAIAPGAALAPGAAMALRAAMATGAAMATGAATMAPGAALALGAAMAAGAAMAPGAAMPP 401

Query: 65  GAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAE 124
           GA M  GA +  GA +A GA MA GA    GA +A GA +A GA +A GA  A GA MA 
Sbjct: 402 GAAMPPGAALTPGAALALGAAMAAGASFTPGAALAPGAALARGAALARGAAFAPGAAMAP 461

Query: 125 GAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAEGAVMAE 184
           GA  A GA MA GA  A GA MA GA  + GA  A GA    GA    GA  A GA    
Sbjct: 462 GAAFARGAAMAPGAAFARGAAMAPGAAFSRGAAFARGAAFPRGAAFPRGAAFARGAAFPP 521

Query: 185 GAVMAEGAVMAEGAVMAEGAVMAEGA 210
           GA MA    +  G   A   ++A GA
Sbjct: 522 GAGMAPRVAVPPGFASASTGLLAPGA 547

The following BLAST results are available for this feature:
BLAST of CSPI04G08460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G08460 vs. TrEMBL
Match NameE-valueIdentityDescription
L8GLS9_ACACA1.9e-2651.60Uncharacterized protein OS=Acanthamoeba castellanii str. Neff GN=ACA1_076470 PE=... [more]
A0A0S1FMM6_BATGR1.0e-2238.20Zinc finger protein 36 C3H type-like 3 OS=Batomys granti GN=Zfp36l3 PE=4 SV=1[more]
A0A0S1FMM2_APODA2.1e-2049.03Zinc finger protein 36 C3H type-like 3 OS=Apomys datae GN=Zfp36l3 PE=4 SV=1[more]
U1HZZ8_ENDPU2.3e-1959.62Uncharacterized protein OS=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) G... [more]
A7S8Y3_NEMVE8.8e-1948.66Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g28036 PE=4 SV=1[more]
BLAST of CSPI04G08460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G08460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|929332586|ref|XP_014040752.1|3.6e-3444.09PREDICTED: collagen EMF1-alpha-like [Salmo salar][more]
gi|470404521|ref|XP_004335807.1|2.8e-2651.60hypothetical protein ACA1_076470 [Acanthamoeba castellanii str. Neff][more]
gi|940836683|gb|ALK28645.1|1.4e-2238.20zinc finger protein 36 C3H type-like 3 [Batomys granti][more]
gi|908422775|ref|XP_013072769.1|3.5e-2151.43PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Biomphalaria glabrata... [more]
gi|940836673|gb|ALK28640.1|3.0e-2049.03zinc finger protein 36 C3H type-like 3 [Apomys datae][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011004Trimer_LpxA-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08460.1CSPI04G08460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011004Trimeric LpxA-likeunknownSSF51161Trimeric LpxA-like enzymescoord: 60..254
score: 1.18
NoneNo IPR availableGENE3DG3DSA:2.160.10.10coord: 109..264
score: 1.1E-18coord: 5..108
score: 1.3
NoneNo IPR availablePANTHERPTHR14054FAMILY NOT NAMEDcoord: 1..274
score: 1.5
NoneNo IPR availablePANTHERPTHR14054:SF11SUBFAMILY NOT NAMEDcoord: 1..274
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G08460Cucumber (Chinese Long) v3cpicucB213
CSPI04G08460Watermelon (97103) v2cpiwmbB283
CSPI04G08460Wax gourdcpiwgoB362
CSPI04G08460Cucumber (Gy14) v1cgycpiB411
CSPI04G08460Cucumber (Chinese Long) v2cpicuB182
CSPI04G08460Melon (DHL92) v3.5.1cpimeB312
CSPI04G08460Melon (DHL92) v3.5.1cpimeB318
CSPI04G08460Watermelon (Charleston Gray)cpiwcgB285
CSPI04G08460Watermelon (97103) v1cpiwmB295
CSPI04G08460Bottle gourd (USVL1VR-Ls)cpilsiB281
CSPI04G08460Melon (DHL92) v3.6.1cpimedB303
CSPI04G08460Melon (DHL92) v3.6.1cpimedB310
CSPI04G08460Cucumber (Gy14) v2cgybcpiB168