CSPI03G43580.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGTTTCTGGAGACTGTGGTTTGATTGGAATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGTTTGGTGATGTTTCAACGTCATGTTTATCTCTTGAAAAACGTTTATGGATGAATATTGAGGAGATTGATAGGATTCTACAATTGTCTTTCAATTGTGTTGTTTTTTGTTATTCTATTTTATGATACTGAAACTCTAGTTGTGTCTGCATTTAGGTTTTATGCTATTGAATGTAGAGTGGGAGTATACCATGTTGTGAATTTTGATTTCCCTTTTCTTTCACTACTCCTCAGCCATAGGCCAAAGGTTTCCTCATGGTTTAATGTTTATTCTATTTCAAAATGCTTCTGCATGGTTTAGTGTATCTTGTGTTTTGTTGTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG
BLAST of CSPI03G43580.1 vs. TrEMBL
Match: A0A0A0LH68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 1.0e-107 Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. TrEMBL
Match: W9RMM6_9ROSA (La-related protein 1B OS=Morus notabilis GN=L484_016028 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 6.0e-31 Identity = 113/233 (48.50%), Postives = 137/233 (58.80%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. TrEMBL
Match: A0A061FCP1_THECC (Winged-helix DNA-binding transcription factor family protein, putative OS=Theobroma cacao GN=TCM_034273 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 8.1e-28 Identity = 107/231 (46.32%), Postives = 137/231 (59.31%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. TrEMBL
Match: A0A067HB69_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24 Identity = 95/229 (41.48%), Postives = 128/229 (55.90%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. TrEMBL
Match: A0A067GYY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24 Identity = 95/229 (41.48%), Postives = 128/229 (55.90%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 51.6 bits (122), Expect = 7.0e-07 Identity = 72/226 (31.86%), Postives = 102/226 (45.13%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. NCBI nr
Match: gi|449437412|ref|XP_004136486.1| (PREDICTED: la-related protein 1C [Cucumis sativus]) HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-107 Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. NCBI nr
Match: gi|659132939|ref|XP_008466467.1| (PREDICTED: la-related protein 1C-like [Cucumis melo]) HSP 1 Score: 372.1 bits (954), Expect = 6.6e-100 Identity = 208/219 (94.98%), Postives = 209/219 (95.43%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. NCBI nr
Match: gi|703095498|ref|XP_010095554.1| (La-related protein 1B [Morus notabilis]) HSP 1 Score: 142.5 bits (358), Expect = 8.6e-31 Identity = 113/233 (48.50%), Postives = 137/233 (58.80%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. NCBI nr
Match: gi|1009109000|ref|XP_015887736.1| (PREDICTED: la-related protein 1C-like isoform X2 [Ziziphus jujuba]) HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30 Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 1
BLAST of CSPI03G43580.1 vs. NCBI nr
Match: gi|1009108998|ref|XP_015887729.1| (PREDICTED: la-related protein 1C-like isoform X1 [Ziziphus jujuba]) HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30 Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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