CSPI03G43580 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G43580
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	La-related protein 1B
Location	Chr3 : 37432154 .. 37433152 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTTTCTGGAGACTGTGGTTTGATTGGAATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGTTTGGTGATGTTTCAACGTCATGTTTATCTCTTGAAAAACGTTTATGGATGAATATTGAGGAGATTGATAGGATTCTACAATTGTCTTTCAATTGTGTTGTTTTTTGTTATTCTATTTTATGATACTGAAACTCTAGTTGTGTCTGCATTTAGGTTTTATGCTATTGAATGTAGAGTGGGAGTATACCATGTTGTGAATTTTGATTTCCCTTTTCTTTCACTACTCCTCAGCCATAGGCCAAAGGTTTCCTCATGGTTTAATGTTTATTCTATTTCAAAATGCTTCTGCATGGTTTAGTGTATCTTGTGTTTTGTTGTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG

mRNA sequence

ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG

Coding sequence (CDS)

ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTCTTGCCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGTGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCGCTTGCGGTTTCCGCTACAGAAACCCCTGCTCCTGCCTCCCCGCCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCTCCTTCTCAGGGACCTATCAATGTACCTCCTCAGCGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATGCAGTGGTTGCTCGGCGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTCGAGGCGGCTATTATCGCCCTCCGCCACCTCCACCACCACCTCCCTAG

Homology

[Close]

BLAST of CSPI03G43580 vs. TrEMBL
Match: A0A0A0LH68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.0e-107
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG 120
           SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG 120

Query: 121 ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAV 180
           ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN V
Sbjct: 121 ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPV 180

Query: 181 VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
           VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP
Sbjct: 181 VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 215

[Close]

BLAST of CSPI03G43580 vs. TrEMBL
Match: W9RMM6_9ROSA (La-related protein 1B OS=Morus notabilis GN=L484_016028 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.0e-31
Identity = 113/233 (48.50%), Postives = 137/233 (58.80%), Query Frame = 1


Query: 1   MGKATD-FSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSS 60
           M  A D  SSNH SP     A D   S   RR  L SPWAQVVRGEPESI  V QS   S
Sbjct: 1   MASAADPSSSNHHSPE--FFAADAVESPRLRRATLSSPWAQVVRGEPESIPTVHQSP-PS 60

Query: 61  SSSSLSSLAVSATE------------TPAPASPPS-DNFTSSENCDANDGNAA--SKKQA 120
           SSSSLSSLA S ++             P+P+SPP  +N  ++EN + N+ + A   KK A
Sbjct: 61  SSSSLSSLAPSVSDQIPFSDCSPSKAAPSPSSPPPMNNSLAAENSNGNNSDIALKPKKPA 120

Query: 121 WNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINV-PPQ 180
           W KP+NGVVE GSVMGAD WPAL+ESARA PK + DS  K   + +V  SQGP+    P+
Sbjct: 121 WKKPSNGVVEVGSVMGADIWPALSESARAPPKQSADSSSKPLADGSVSSSQGPVKTNSPK 180

Query: 181 RQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
           + A +NA  N T  + +  R R  +RGG GGG +       +  PPPPPPPPP
Sbjct: 181 KHANSNANPNSTHNHHLHNRQRPMKRGGAGGGPA----HSNFAHPPPPPPPPP 226

[Close]

BLAST of CSPI03G43580 vs. TrEMBL
Match: A0A061FCP1_THECC (Winged-helix DNA-binding transcription factor family protein, putative OS=Theobroma cacao GN=TCM_034273 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.1e-28
Identity = 107/231 (46.32%), Postives = 137/231 (59.31%), Query Frame = 1


Query: 8   SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---L 67
           +++  SPS   L     NS +FRRKNL SPWAQVVRGE ESI  V  +  S SS++   +
Sbjct: 4   TADSSSPSDGGL-----NSPQFRRKNLPSPWAQVVRGESESIVAVHHTPSSPSSATSPPV 63

Query: 68  SSLAVSAT----------ETPAPASPPSDNFTSSENCDANDGN---AASKKQAWNKPTNG 127
           +SL   AT           + + +SPP DN  +    D+N  +   A SKK AWNKP+NG
Sbjct: 64  ASLPEQATFSDCSPSKAASSSSSSSPPPDNLAADGGSDSNSNSNAAARSKKPAWNKPSNG 123

Query: 128 VVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVP--PQRQATNN 187
           VVE   VMGA SWPAL+E+ARASPK   DS  K   + ++  SQGP+ +P   Q+Q T+N
Sbjct: 124 VVEVSPVMGAASWPALSEAARASPKSLADSSSKTVPDGSLSTSQGPV-IPQSTQKQGTSN 183

Query: 188 AKSNPTLKNAVVAR-RSSRRGGGGGG--SSVGGPRGGY--YRPPPPPPPPP 216
           A    T    + +R RSS+RGG GGG  S+ G P  G+    PPPPPPPPP
Sbjct: 184 ANPTSTPNRTMSSRQRSSKRGGSGGGNNSASGPPHSGFSHQHPPPPPPPPP 228

[Close]

BLAST of CSPI03G43580 vs. TrEMBL
Match: A0A067HB69_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 95/229 (41.48%), Postives = 128/229 (55.90%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           M    D +SNH +P G+  +GD  +S + RRKN  S W++VVRGE +  S       SS 
Sbjct: 1   MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP 60

Query: 61  SSSLS---------SLAVSATETPAPASPPSDNFTSSENCDANDGNAAS-KKQAWNKPTN 120
           S  L+         S++ S     AP+SPP DN  ++ + DA+ GNAA  KK AWNKP+N
Sbjct: 61  SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNAARPKKLAWNKPSN 120

Query: 121 GVVEGGSVMGADSWPALAESARASPKLTV--DSPPKVTVEVAVPPSQGPINVP--PQRQA 180
           GVVE G VMGA SWPAL+ES + SPK +    S  K   + +V  +Q P+ +P  PQ+ +
Sbjct: 121 GVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQVPL-IPHLPQKVS 180

Query: 181 TNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
             NA  N      + AR+  +R GGG  ++  GP       PPPPPPPP
Sbjct: 181 NANANPNSNANRTMPARQRLKRSGGGVSNAGSGPAQTRPTQPPPPPPPP 228

[Close]

BLAST of CSPI03G43580 vs. TrEMBL
Match: A0A067GYY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 95/229 (41.48%), Postives = 128/229 (55.90%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           M    D +SNH +P G+  +GD  +S + RRKN  S W++VVRGE +  S       SS 
Sbjct: 1   MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP 60

Query: 61  SSSLS---------SLAVSATETPAPASPPSDNFTSSENCDANDGNAAS-KKQAWNKPTN 120
           S  L+         S++ S     AP+SPP DN  ++ + DA+ GNAA  KK AWNKP+N
Sbjct: 61  SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNAARPKKLAWNKPSN 120

Query: 121 GVVEGGSVMGADSWPALAESARASPKLTV--DSPPKVTVEVAVPPSQGPINVP--PQRQA 180
           GVVE G VMGA SWPAL+ES + SPK +    S  K   + +V  +Q P+ +P  PQ+ +
Sbjct: 121 GVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQVPL-IPHLPQKVS 180

Query: 181 TNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
             NA  N      + AR+  +R GGG  ++  GP       PPPPPPPP
Sbjct: 181 NANANPNSNANRTMPARQRLKRSGGGVSNAGSGPAQTRPTQPPPPPPPP 228

[Close]

BLAST of CSPI03G43580 vs. TAIR10
Match: AT4G35890.1 (AT4G35890.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.0e-07
Identity = 72/226 (31.86%), Postives = 102/226 (45.13%), Query Frame = 1


Query: 8   SSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---L 67
           S NH SP+ +        S     + + SPW Q+VRGE E I+        SS  S   +
Sbjct: 20  SGNHGSPTASVAQSPRRPS-----RQVSSPWTQIVRGESEPIAAAAAVAGPSSPQSRAPI 79

Query: 68  SSLAVSATETPAPASPPSDNFTSSENCDANDG-NAASKKQAWNKPTNGVVEGGSVMGADS 127
             +A  +   P  A    +     E  +A+ G + A KK  W +P+NG  E G VMGA S
Sbjct: 80  EPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVGPVMGASS 139

Query: 128 WPALAESARA--------SPKLTVDSPPKVTVEVAVPPSQGPIN--VPPQRQATNNAKSN 187
           WPAL+E+ +A        S K   D P   +   +VP +QG  N  VP  +QA   A  N
Sbjct: 140 WPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQA-GRANPN 199

Query: 188 PTLKNAVVARRSSRRGGGGGGSSVG-----GPRGGYYRPPPPPPPP 215
           PT  ++   +RS ++  G  GS+ G       +G +   P   P P
Sbjct: 200 PTPNHS--RQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSP 237

[Close]

BLAST of CSPI03G43580 vs. NCBI nr
Match: gi|449437412|ref|XP_004136486.1| (PREDICTED: la-related protein 1C [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-107
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG 120
           SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAASKKQAWNKPTNGVVEGGSVMG 120

Query: 121 ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNAV 180
           ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN V
Sbjct: 121 ADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPV 180

Query: 181 VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
           VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP
Sbjct: 181 VARRSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 215

[Close]

BLAST of CSPI03G43580 vs. NCBI nr
Match: gi|659132939|ref|XP_008466467.1| (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.6e-100
Identity = 208/219 (94.98%), Postives = 209/219 (95.43%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATDFSSN RSPSGTS  GDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGN--AASKKQAWNKPTNGVVEGGSV 120
           SSSLSSLAVSATETPAPASPPSDNFTSSENCD NDGN  AASKKQAWNKPTNGVVEGGSV
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSV 120

Query: 121 MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN 180
           MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN
Sbjct: 121 MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN 180

Query: 181 AVVAR-RSSRRGGGGGGSSVGGP-RGGYYRPPPPPPPPP 216
            VV R RSSRRGGGGGGSSVGGP RGG+YRPPPPPPPPP
Sbjct: 181 PVVPRLRSSRRGGGGGGSSVGGPARGGFYRPPPPPPPPP 219

[Close]

BLAST of CSPI03G43580 vs. NCBI nr
Match: gi|703095498|ref|XP_010095554.1| (La-related protein 1B [Morus notabilis])

HSP 1 Score: 142.5 bits (358), Expect = 8.6e-31
Identity = 113/233 (48.50%), Postives = 137/233 (58.80%), Query Frame = 1


Query: 1   MGKATD-FSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSS 60
           M  A D  SSNH SP     A D   S   RR  L SPWAQVVRGEPESI  V QS   S
Sbjct: 1   MASAADPSSSNHHSPE--FFAADAVESPRLRRATLSSPWAQVVRGEPESIPTVHQSP-PS 60

Query: 61  SSSSLSSLAVSATE------------TPAPASPPS-DNFTSSENCDANDGNAA--SKKQA 120
           SSSSLSSLA S ++             P+P+SPP  +N  ++EN + N+ + A   KK A
Sbjct: 61  SSSSLSSLAPSVSDQIPFSDCSPSKAAPSPSSPPPMNNSLAAENSNGNNSDIALKPKKPA 120

Query: 121 WNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINV-PPQ 180
           W KP+NGVVE GSVMGAD WPAL+ESARA PK + DS  K   + +V  SQGP+    P+
Sbjct: 121 WKKPSNGVVEVGSVMGADIWPALSESARAPPKQSADSSSKPLADGSVSSSQGPVKTNSPK 180

Query: 181 RQATNNAKSNPTLKNAVVAR-RSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPP 216
           + A +NA  N T  + +  R R  +RGG GGG +       +  PPPPPPPPP
Sbjct: 181 KHANSNANPNSTHNHHLHNRQRPMKRGGAGGGPA----HSNFAHPPPPPPPPP 226

[Close]

BLAST of CSPI03G43580 vs. NCBI nr
Match: gi|1009109000|ref|XP_015887736.1| (PREDICTED: la-related protein 1C-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAG---DNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQL 60
           M  A D SSNH S SG   +G   D  +S + RR NL S WAQVVRGE E+I  V+QS  
Sbjct: 1   MAMAADSSSNHHSSSGQVFSGGDGDGADSPQLRRSNLPSAWAQVVRGEAEAIPGVNQSP- 60

Query: 61  SSSSSSLSSLAVSATE-------TPAPA-------SPPSDNFTSSENCDANDGNAAS-KK 120
            SSSSSLSSLA S  E       +P+ A       SPP  N  +++N + N+GNA   KK
Sbjct: 61  PSSSSSLSSLATSVPEQLPFSDCSPSKAAPSSSSSSPPPSNSAAADNSNGNNGNATRPKK 120

Query: 121 QAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINV-P 180
            AWNKP+NG+VE  + + ADSWPAL+ES RASPK + D   K  ++ +V  +QGPI    
Sbjct: 121 PAWNKPSNGLVEVPTAIDADSWPALSESTRASPKPSADPSSKPPMDGSVSNAQGPITTHS 180

Query: 181 PQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP-RGGYYRPPPPPPPPP 216
           P++QA+ +A  + T  +A+  R+   +   GGG++VGGP    +  PPPPPPPPP
Sbjct: 181 PKKQASTHANPHTTPNHALPTRQRPMK--RGGGNNVGGPVHSSFTHPPPPPPPPP 232

[Close]

BLAST of CSPI03G43580 vs. NCBI nr
Match: gi|1009108998|ref|XP_015887729.1| (PREDICTED: la-related protein 1C-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 109/235 (46.38%), Postives = 143/235 (60.85%), Query Frame = 1


Query: 1   MGKATDFSSNHRSPSGTSLAG---DNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQL 60
           M  A D SSNH S SG   +G   D  +S + RR NL S WAQVVRGE E+I  V+QS  
Sbjct: 1   MAMAADSSSNHHSSSGQVFSGGDGDGADSPQLRRSNLPSAWAQVVRGEAEAIPGVNQSP- 60

Query: 61  SSSSSSLSSLAVSATE-------TPAPA-------SPPSDNFTSSENCDANDGNAAS-KK 120
            SSSSSLSSLA S  E       +P+ A       SPP  N  +++N + N+GNA   KK
Sbjct: 61  PSSSSSLSSLATSVPEQLPFSDCSPSKAAPSSSSSSPPPSNSAAADNSNGNNGNATRPKK 120

Query: 121 QAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINV-P 180
            AWNKP+NG+VE  + + ADSWPAL+ES RASPK + D   K  ++ +V  +QGPI    
Sbjct: 121 PAWNKPSNGLVEVPTAIDADSWPALSESTRASPKPSADPSSKPPMDGSVSNAQGPITTHS 180

Query: 181 PQRQATNNAKSNPTLKNAVVARRSSRRGGGGGGSSVGGP-RGGYYRPPPPPPPPP 216
           P++QA+ +A  + T  +A+  R+   +   GGG++VGGP    +  PPPPPPPPP
Sbjct: 181 PKKQASTHANPHTTPNHALPTRQRPMK--RGGGNNVGGPVHSSFTHPPPPPPPPP 232

The following BLAST results are available for this feature:

BLAST of CSPI03G43580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G43580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH68_CUCSA	1.0e-107	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1	[more]
W9RMM6_9ROSA	6.0e-31	48.50	La-related protein 1B OS=Morus notabilis GN=L484_016028 PE=4 SV=1	[more]
A0A061FCP1_THECC	8.1e-28	46.32	Winged-helix DNA-binding transcription factor family protein, putative OS=Theobr...	[more]
A0A067HB69_CITSI	4.1e-24	41.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1	[more]
A0A067GYY0_CITSI	4.1e-24	41.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008981mg PE=4 SV=1	[more]

BLAST of CSPI03G43580 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35890.1	7.0e-07	31.86	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CSPI03G43580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437412\|ref\|XP_004136486.1\|	1.5e-107	99.53	PREDICTED: la-related protein 1C [Cucumis sativus]	[more]
gi\|659132939\|ref\|XP_008466467.1\|	6.6e-100	94.98	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]
gi\|703095498\|ref\|XP_010095554.1\|	8.6e-31	48.50	La-related protein 1B [Morus notabilis]	[more]
gi\|1009109000\|ref\|XP_015887736.1\|	1.9e-30	46.38	PREDICTED: la-related protein 1C-like isoform X2 [Ziziphus jujuba]	[more]
gi\|1009108998\|ref\|XP_015887729.1\|	1.9e-30	46.38	PREDICTED: la-related protein 1C-like isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G43580.1	CSPI03G43580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 61..215 score: 4.0
None	No IPR available	PANTHER	PTHR22792:SF66	LA-RELATED PROTEIN 7	coord: 61..215 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G43580	Watermelon (97103) v2	cpiwmbB227
CSPI03G43580	Wax gourd	cpiwgoB350
CSPI03G43580	Cucumber (Gy14) v1	cgycpiB504
CSPI03G43580	Cucurbita maxima (Rimu)	cmacpiB017
CSPI03G43580	Cucurbita maxima (Rimu)	cmacpiB447
CSPI03G43580	Cucurbita moschata (Rifu)	cmocpiB008
CSPI03G43580	Cucurbita moschata (Rifu)	cmocpiB435
CSPI03G43580	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G43580	Melon (DHL92) v3.5.1	cpimeB215
CSPI03G43580	Watermelon (Charleston Gray)	cpiwcgB244
CSPI03G43580	Watermelon (97103) v1	cpiwmB249
CSPI03G43580	Cucurbita pepo (Zucchini)	cpecpiB558
CSPI03G43580	Cucurbita pepo (Zucchini)	cpecpiB781
CSPI03G43580	Bottle gourd (USVL1VR-Ls)	cpilsiB190
CSPI03G43580	Melon (DHL92) v3.6.1	cpimedB209
CSPI03G43580	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G43580	Silver-seed gourd	carcpiB0116
CSPI03G43580	Silver-seed gourd	carcpiB0984
CSPI03G43580	Cucumber (Chinese Long) v3	cpicucB145