CSPI03G21000.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21000.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon 297 family
Location	Chr3 : 17103937 .. 17104328 (+)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGTAGGTTTTAGTTCTCCTAAAACCATAAAAATAAAAGGCGAAATCAGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

mRNA sequence

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Coding sequence (CDS)

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Homology

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BLAST of CSPI03G21000.1 vs. TrEMBL
Match: A0A067D9Z8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045527mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEI 62
           +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++
Sbjct: 62  QECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQV 121

Query: 63  ANLSLHSL-------------ESRSCRV----DGGATHNFISEEVVKELKIPIETLDAYG 114
             +SL+S+             E  + +V    D GA+HNFIS EVV  LK+PI   + YG
Sbjct: 122 VEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG 181

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BLAST of CSPI03G21000.1 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIV-IQEGEDLSGEIDKVAKETEDENEQINTEIA 61
           K+E GLCFRCDEK+++GHRCK++EL+I++  +E E+  G + +  +    ++ Q+     
Sbjct: 345 KREHGLCFRCDEKWAIGHRCKKKELSILLGHEEEEEEYGSLMENIQPAHPDDSQLEIHSP 404

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 109
            +SL+S+   S                   VD GATHNFIS + V+ L+IPI +   +GV
Sbjct: 405 EISLNSVMGISSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDTVRRLQIPISSSRPFGV 464

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BLAST of CSPI03G21000.1 vs. TrEMBL
Match: A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE-GEDLSGEIDKVAKETEDENEQINTEIA 61
           +K  GLCFRCDEK+ + H+C ++E+N++++QE G D+  E D    +  D  +Q  TE+A
Sbjct: 341 RKADGLCFRCDEKWHIRHQCPKKEVNVLLVQEDGPDILWEAD---DDFTDATDQAITELA 400

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 113
            LSL+S+   S                   +D GA+HNF+SE++V  L +      +YGV
Sbjct: 401 ELSLNSMVGISSPSTMKLMGTIQTTEVVVLIDSGASHNFVSEQLVHRLGLQSAKTGSYGV 460

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BLAST of CSPI03G21000.1 vs. TrEMBL
Match: A0A087GW89_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANL 62
           + +GLCFRCDEK+   HRC RREL+++++QE       +++   ++++E   +  E+A L
Sbjct: 365 RAEGLCFRCDEKWYERHRCPRRELSVVIVQEEGPDKEWVEEDETDSDEEGVTV-AEMATL 424

Query: 63  SLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVL 108
           SL+SL   S                   +D GA+HNFISE +VK+L +  E    YGV++
Sbjct: 425 SLNSLVGISSPRTMKLKAKMLGTEVVVMIDSGASHNFISEPLVKKLSMKTEESHCYGVMM 484

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BLAST of CSPI03G21000.1 vs. TrEMBL
Match: A0A0D3BSK9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-12
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIAN 61
           +K+  LCFRCDEK+   H C R+EL ++V+ E        ++  +  EDE E+I TE+A 
Sbjct: 466 RKKDDLCFRCDEKYVYPHVCSRKELMVLVVHENGTEIEISEEQMEHREDEEEEI-TEVAE 525

Query: 62  LSLHSLESRSC-----------------RVDGGATHNFISEEVVKELKIPIETLDAYGVV 113
           LS++S+   S                   +D GATHNFISE +V+ L +   T   YGV+
Sbjct: 526 LSVNSVVGLSAPHTIKLRGTINGEEVVVLIDSGATHNFISESLVRRLGLTRGTSRGYGVM 585

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BLAST of CSPI03G21000.1 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE----GEDLSGEIDKVAKETEDENE---- 61
           K++KGLCFRCDEKF +GHRCK++EL +I+ +E    GE+L  E D  A   EDE E    
Sbjct: 577 KRKKGLCFRCDEKFFVGHRCKQKELQVILAEEITETGEELEEEQDNEAGNREDEGEFAEL 636

Query: 62  QINTEIANLSLHSLESRS--------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVL 113
            +N+ +   S  +L+ R           +D GATHNFIS +++K+LK+  E    +GV L
Sbjct: 637 SLNSVVGLTSPKTLKIRGSIEGQEVVVLIDSGATHNFISLKLMKKLKLRPEGNTQFGVSL 696

[Close]

BLAST of CSPI03G21000.1 vs. NCBI nr
Match: gi|641816240|gb|KDO38385.1| (hypothetical protein CISIN_1g045527mg, partial [Citrus sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-15
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEI 62
           +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++
Sbjct: 62  QECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQV 121

Query: 63  ANLSLHSL-------------ESRSCRV----DGGATHNFISEEVVKELKIPIETLDAYG 114
             +SL+S+             E  + +V    D GA+HNFIS EVV  LK+PI   + YG
Sbjct: 122 VEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG 181

[Close]

BLAST of CSPI03G21000.1 vs. NCBI nr
Match: gi|731341463|ref|XP_010681914.1| (PREDICTED: uncharacterized protein LOC104896819 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSG-EIDKVAKETEDENEQINTEIA 61
           K+ KGLCFRCDEK+++GHRCKRREL++++ Q   DL G E  +++   E     I +EI+
Sbjct: 377 KRAKGLCFRCDEKWNVGHRCKRRELSVLLTQ---DLDGEEAQELSVMEEGAPPSIQSEIS 436

Query: 62  NLSLHSLESRS--------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVLG 113
             S+  +++                  VD GATHNFIS   VK+L +PI     +GV LG
Sbjct: 437 LNSVLGIDAPKTLKMKGQINGQDVVVMVDPGATHNFISLATVKKLSLPISPTQNFGVTLG 496

[Close]

BLAST of CSPI03G21000.1 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCK---RRELNIIVIQEGEDLSGEIDKVAKETE----DENEQ 61
           +KEKGLCFRC+EK+S  H+C+   +REL + V+ EG +    +++  +E E    + NE 
Sbjct: 351 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKELGRIEVNED 410

Query: 62  INTEIANLSLHSL-----------------ESRSCRVDGGATHNFISEEVVKELKIPIET 113
           I T +  LS++S+                 E     +D GATHNF+SE++VK+L +PI+ 
Sbjct: 411 ITT-VVELSINSVVGLNDPGTMKVRGKLLGEEVIILIDCGATHNFVSEKLVKKLILPIKE 470

[Close]

BLAST of CSPI03G21000.1 vs. NCBI nr
Match: gi|729346269|ref|XP_010541862.1| (PREDICTED: uncharacterized protein LOC104815241 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-14
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE-GEDLSGEIDKVAKETEDENEQINTEIA 61
           ++++GLCFRCDEK+  GH+CK +EL +IV+QE GE L         +   E   +  EIA
Sbjct: 368 RRKRGLCFRCDEKYFFGHKCKLKELQVIVVQEDGETLLAA--DAHPDPVPEEPPVAPEIA 427

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 113
            LSL+ +   +                   VD GATHNFIS EV+++L+I  ET   YGV
Sbjct: 428 ELSLNFVVGLTSPKTLKLQGSISKLPVIVMVDSGATHNFISWEVIRKLRICPETTTGYGV 487

The following BLAST results are available for this feature:

BLAST of CSPI03G21000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067D9Z8_CITSI	2.4e-15	38.93	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045527mg PE=4 S...	[more]
E2DMZ5_BETVU	1.0e-13	38.40	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]
A0A087GEK8_ARAAL	1.1e-12	36.43	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1	[more]
A0A087GW89_ARAAL	2.5e-12	36.89	Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1	[more]
A0A0D3BSK9_BRAOL	5.6e-12	36.72	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]

BLAST of CSPI03G21000.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G21000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729344250\|ref\|XP_010541181.1\|	5.4e-16	43.31	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|641816240\|gb\|KDO38385.1\|	3.5e-15	38.93	hypothetical protein CISIN_1g045527mg, partial [Citrus sinensis]	[more]
gi\|731341463\|ref\|XP_010681914.1\|	2.3e-14	41.27	PREDICTED: uncharacterized protein LOC104896819 [Beta vulgaris subsp. vulgaris]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	3.9e-14	37.78	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|729346269\|ref\|XP_010541862.1\|	6.6e-14	41.09	PREDICTED: uncharacterized protein LOC104815241 isoform X1 [Tarenaya hassleriana...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G21000	CSPI03G21000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G21000.1	CSPI03G21000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G21000.1.cds1	CSPI03G21000.1.cds1	CDS
CSPI03G21000.1.cds2	CSPI03G21000.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..65 scor