CSPI03G21000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon 297 family
Location	Chr3 : 17103937 .. 17104328 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGTAGGTTTTAGTTCTCCTAAAACCATAAAAATAAAAGGCGAAATCAGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

mRNA sequence

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Coding sequence (CDS)

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Homology

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BLAST of CSPI03G21000 vs. TrEMBL
Match: A0A067D9Z8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045527mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEI 62
           +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++
Sbjct: 62  QECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQV 121

Query: 63  ANLSLHSL-------------ESRSCRV----DGGATHNFISEEVVKELKIPIETLDAYG 114
             +SL+S+             E  + +V    D GA+HNFIS EVV  LK+PI   + YG
Sbjct: 122 VEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG 181

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BLAST of CSPI03G21000 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIV-IQEGEDLSGEIDKVAKETEDENEQINTEIA 61
           K+E GLCFRCDEK+++GHRCK++EL+I++  +E E+  G + +  +    ++ Q+     
Sbjct: 345 KREHGLCFRCDEKWAIGHRCKKKELSILLGHEEEEEEYGSLMENIQPAHPDDSQLEIHSP 404

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 109
            +SL+S+   S                   VD GATHNFIS + V+ L+IPI +   +GV
Sbjct: 405 EISLNSVMGISSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDTVRRLQIPISSSRPFGV 464

[Close]

BLAST of CSPI03G21000 vs. TrEMBL
Match: A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE-GEDLSGEIDKVAKETEDENEQINTEIA 61
           +K  GLCFRCDEK+ + H+C ++E+N++++QE G D+  E D    +  D  +Q  TE+A
Sbjct: 341 RKADGLCFRCDEKWHIRHQCPKKEVNVLLVQEDGPDILWEAD---DDFTDATDQAITELA 400

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 113
            LSL+S+   S                   +D GA+HNF+SE++V  L +      +YGV
Sbjct: 401 ELSLNSMVGISSPSTMKLMGTIQTTEVVVLIDSGASHNFVSEQLVHRLGLQSAKTGSYGV 460

[Close]

BLAST of CSPI03G21000 vs. TrEMBL
Match: A0A087GW89_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANL 62
           + +GLCFRCDEK+   HRC RREL+++++QE       +++   ++++E   +  E+A L
Sbjct: 365 RAEGLCFRCDEKWYERHRCPRRELSVVIVQEEGPDKEWVEEDETDSDEEGVTV-AEMATL 424

Query: 63  SLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVL 108
           SL+SL   S                   +D GA+HNFISE +VK+L +  E    YGV++
Sbjct: 425 SLNSLVGISSPRTMKLKAKMLGTEVVVMIDSGASHNFISEPLVKKLSMKTEESHCYGVMM 484

[Close]

BLAST of CSPI03G21000 vs. TrEMBL
Match: A0A0D3BSK9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-12
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIAN 61
           +K+  LCFRCDEK+   H C R+EL ++V+ E        ++  +  EDE E+I TE+A 
Sbjct: 466 RKKDDLCFRCDEKYVYPHVCSRKELMVLVVHENGTEIEISEEQMEHREDEEEEI-TEVAE 525

Query: 62  LSLHSLESRSC-----------------RVDGGATHNFISEEVVKELKIPIETLDAYGVV 113
           LS++S+   S                   +D GATHNFISE +V+ L +   T   YGV+
Sbjct: 526 LSVNSVVGLSAPHTIKLRGTINGEEVVVLIDSGATHNFISESLVRRLGLTRGTSRGYGVM 585

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BLAST of CSPI03G21000 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE----GEDLSGEIDKVAKETEDENE---- 61
           K++KGLCFRCDEKF +GHRCK++EL +I+ +E    GE+L  E D  A   EDE E    
Sbjct: 577 KRKKGLCFRCDEKFFVGHRCKQKELQVILAEEITETGEELEEEQDNEAGNREDEGEFAEL 636

Query: 62  QINTEIANLSLHSLESRS--------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVL 113
            +N+ +   S  +L+ R           +D GATHNFIS +++K+LK+  E    +GV L
Sbjct: 637 SLNSVVGLTSPKTLKIRGSIEGQEVVVLIDSGATHNFISLKLMKKLKLRPEGNTQFGVSL 696

[Close]

BLAST of CSPI03G21000 vs. NCBI nr
Match: gi|641816240|gb|KDO38385.1| (hypothetical protein CISIN_1g045527mg, partial [Citrus sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-15
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEI 62
           +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++
Sbjct: 62  QECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQV 121

Query: 63  ANLSLHSL-------------ESRSCRV----DGGATHNFISEEVVKELKIPIETLDAYG 114
             +SL+S+             E  + +V    D GA+HNFIS EVV  LK+PI   + YG
Sbjct: 122 VEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG 181

[Close]

BLAST of CSPI03G21000 vs. NCBI nr
Match: gi|731341463|ref|XP_010681914.1| (PREDICTED: uncharacterized protein LOC104896819 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSG-EIDKVAKETEDENEQINTEIA 61
           K+ KGLCFRCDEK+++GHRCKRREL++++ Q   DL G E  +++   E     I +EI+
Sbjct: 377 KRAKGLCFRCDEKWNVGHRCKRRELSVLLTQ---DLDGEEAQELSVMEEGAPPSIQSEIS 436

Query: 62  NLSLHSLESRS--------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVVLG 113
             S+  +++                  VD GATHNFIS   VK+L +PI     +GV LG
Sbjct: 437 LNSVLGIDAPKTLKMKGQINGQDVVVMVDPGATHNFISLATVKKLSLPISPTQNFGVTLG 496

[Close]

BLAST of CSPI03G21000 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCK---RRELNIIVIQEGEDLSGEIDKVAKETE----DENEQ 61
           +KEKGLCFRC+EK+S  H+C+   +REL + V+ EG +    +++  +E E    + NE 
Sbjct: 351 RKEKGLCFRCNEKYSADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEEKELGRIEVNED 410

Query: 62  INTEIANLSLHSL-----------------ESRSCRVDGGATHNFISEEVVKELKIPIET 113
           I T +  LS++S+                 E     +D GATHNF+SE++VK+L +PI+ 
Sbjct: 411 ITT-VVELSINSVVGLNDPGTMKVRGKLLGEEVIILIDCGATHNFVSEKLVKKLILPIKE 470

[Close]

BLAST of CSPI03G21000 vs. NCBI nr
Match: gi|729346269|ref|XP_010541862.1| (PREDICTED: uncharacterized protein LOC104815241 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-14
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 1


Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQE-GEDLSGEIDKVAKETEDENEQINTEIA 61
           ++++GLCFRCDEK+  GH+CK +EL +IV+QE GE L         +   E   +  EIA
Sbjct: 368 RRKRGLCFRCDEKYFFGHKCKLKELQVIVVQEDGETLLAA--DAHPDPVPEEPPVAPEIA 427

Query: 62  NLSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGV 113
            LSL+ +   +                   VD GATHNFIS EV+++L+I  ET   YGV
Sbjct: 428 ELSLNFVVGLTSPKTLKLQGSISKLPVIVMVDSGATHNFISWEVIRKLRICPETTTGYGV 487

The following BLAST results are available for this feature:

BLAST of CSPI03G21000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067D9Z8_CITSI	2.4e-15	38.93	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045527mg PE=4 S...	[more]
E2DMZ5_BETVU	1.0e-13	38.40	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]
A0A087GEK8_ARAAL	1.1e-12	36.43	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1	[more]
A0A087GW89_ARAAL	2.5e-12	36.89	Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1	[more]
A0A0D3BSK9_BRAOL	5.6e-12	36.72	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]

BLAST of CSPI03G21000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G21000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729344250\|ref\|XP_010541181.1\|	5.4e-16	43.31	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|641816240\|gb\|KDO38385.1\|	3.5e-15	38.93	hypothetical protein CISIN_1g045527mg, partial [Citrus sinensis]	[more]
gi\|731341463\|ref\|XP_010681914.1\|	2.3e-14	41.27	PREDICTED: uncharacterized protein LOC104896819 [Beta vulgaris subsp. vulgaris]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	3.9e-14	37.78	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|729346269\|ref\|XP_010541862.1\|	6.6e-14	41.09	PREDICTED: uncharacterized protein LOC104815241 isoform X1 [Tarenaya hassleriana...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21000.1	CSPI03G21000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..65 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21000	Wax gourd	cpiwgoB271
CSPI03G21000	Wax gourd	cpiwgoB303
CSPI03G21000	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21000	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21000	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21000	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21000	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21000	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21000	Watermelon (Charleston Gray)	cpiwcgB230
CSPI03G21000	Watermelon (97103) v1	cpiwmB236
CSPI03G21000	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21000	Bottle gourd (USVL1VR-Ls)	cpilsiB203
CSPI03G21000	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21000	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21000	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21000	Silver-seed gourd	carcpiB0519
CSPI03G21000	Silver-seed gourd	carcpiB0520
CSPI03G21000	Silver-seed gourd	carcpiB0798
CSPI03G21000	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21000	Watermelon (97103) v2	cpiwmbB213
CSPI03G21000	Watermelon (97103) v2	cpiwmbB224