CSPI03G18670.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G18670.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTubby-like F-box protein
LocationChr3 : 14288685 .. 14292186 (-)
Sequence length201
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAAATATTTGTAAGCCAAACAAAATAGAGCATTGAATGGGTTCACAGTTTGGGAAAGTGGGTGAGTTATTTTGGAAAGATGAGATCCAAAAGCCTTTTCATTTAATAAGTAGGAGACGTGGCGGGTGGGAATTTCCAAGCTCATTTAACAAAAAAATTGCTTTACCAATTTGCAATACACATATCTATCTCACCCCCACAAAAAAGTAATCAAATAAAAAGTAGATTCTGATCTAAACACAGTGTCTGGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTGTGAGTTTAAACACTTCCTCTTTCGCTTGTAACCTTTTCTTTTTTTTTTTTGTTTAGCCCTATTATTTGTGACTGGATCGGCATTTTAGGGCATCCAGGATTCCGTTTCCTTAATTGCAGCAATTGGTTATTGATTTGAAATTAAATGATTAGATTTCAAAATTAATCTAACAAACTAATTTGAGAATAGTGTTTTTGACTTAAAAATTGATATTGATTTGAAATTGGATTTAATGGAAAAAAGAATGAGATTAAGAAAAAGTTGGTTGGGTTGGGTGTGGTGTGGTGCAGCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTTAATTTAAATAATTATGTGATATGAAATTAGATACTTAGACCTCTTTTCTGGCAATCCTATAATACATTAATGCCACCTCCCACTTCCATTTTCATTCTTTTCTTTTCATCCATTTCATATTCTTTCTTATCTAATTATGATCATTATTATTCTCTTAATTCTCAAATAAATAAGCTTATCTTTTTCTTTTTATTTTACAATTTTATCTCATCATCTTTTTAACAAATCTCACCTTATGATATTTCTATTGTTCCGTTTTCATAATGAACCATTTCTTTTCTTTTCATTCATTAACCAGTTAATTGTTTTTAAATTTGATCTTCATAACCTAAAATTTATAGAACCCAAATCAATAATAGTTGAGCAAAGGAAAAGTTTTCACACACACTCAAAAAAACAACCAAAATTGTTATTACATATAAGAGAGATAGGTGTAGTAAAGAATATAATATAATGTTTACCTATATAGGGTACAGTATAAGTGTACAATTTACATGTAGCTTCCAAGACATCAAATTTTCCTACAATATAATTAAGTTGTGGTATTAAGTAACAATTAGTAACAATGCAGGCATGTATCACAACAAATATTAAGAATATATATATCAAAGGAAACTCTAAACTAAAAAAAGTTAAACAACTACAAATGAAGATTATTCCAAAGGTTATGATCTTTGTTAGAATTAGTCCAAATCTAGTTTGGATCTAAGAGTTCACAAATGCTAGGGACAACATGTAAACACTCAAATTTAATTCAAAAAGAATTTAGATCAACGTTATATTACCGTCTAAATCTCGACCAAAAGAACATCCAAGGTGTTTAAATCCTTTTAATATGTGAAATTTTGTTAGGTAATTGATGTAATTTTAGAAATTAATATGAAATTTATTCACTAAAGGAGAAAAAAGATCATAATAATCTCTCTTGCCACGTAATTAATTCAATCAAAGATCACAACTACAAGCAATAAAATGCAACTCTAAACTACATATATATAATTGAAGCTAACTACAAAATTTAACAATTACATTACTATTCAATGAAAGCAAGAATCCTTCACTTTACTAACATTGATGAGTTGCTTGAACTTTGTAATTTCTCATTTGCTCAATTCGTACCAAGTTCGATCAAAATCTAAAGAAAGGAGATAAACACTTCAGTTCAACAAAAGAATTTAAGAATTAAAGTATATAAAAAAAAAAGCTTTTATAACATTCAAATTCAGATTAAGAATAAAAAACCTAAACATCTCACGATGGTTTCTCAAAGCAAAAGGCCACAAAAAACCTTTACAATGATTAAGCCCTTCATCGTTAAGTCCTTTTGCTCAAAAAACCATATTTGAATTTAAGCTTTTTGTATAAATTTCAAATATGAACACGAAAGCAAGTAGCATCTGAGGAAAAACTATAAACACACAAACCTAAAATGGAAATAAACAAAATTATCGTGAAAAAGGAAATTACAATTAGAATAAATTTGAAAATCAAGTCATGAAAGTGCACAAAAGAGAAGAAATAATGTACAAATGAAATAGGTAAAGGAAAACAATGGAGGGAGTGGCGGTGGTGGGTGAAGTAGTGTTGAGAGAGGAAGAGGCGGAGCAACCCAAGGTGGGAAGGGGGCTGTGCGAGCAAACGCGTTGGCGTTGTGAGGAAGATGGAGAGTGAAAAATTAGAGTTTAAATAGTAGGAAGGAAATGAGATCTGAAAGTTCTATATAAAATAGGAAAACTCTAAACAAAGGCGTTGGGAGTTTCTCTACAAAAACATTCTTTCTCAATTTACTCCCGACGTACAACGTTCCGGGTTATGGCTAACTTCCAATGCTTGCCATAGCTTGTAAGGAGATATCATTTTTTCTGACTTATTATCTCTTGATGATTGTCTTGTGTGTCGAAAAATTAACTTTTTCTTGTAGTGAGAAGAGTTACCGATGTTGTTGAACTTAGTTATTTATGTTTTTCGTAACCACATTCTAGATTTTAAAATTATATATATTACTTAAATTTTTTTTTTCTAAACCAAGTTAAGTTAAGACCCTTTTAGATTTTACATGTTTGGTAGGACACACCTTTTATCATTATGATTATGATTATTATTAATTATTTTGTTTAACATGTGATAGAAAAATTTGGGAAAATCTGTCTAAAGCCTTTTTAGATTGTATGTGTGTTAGATAGATATAGGTTATCTAGAAATATTTTTAAATTTATTTTTTTAAAGAATTAAAAAGAAAAATTGGAAGAAAACATGTGTTTTTTTTAATGATTTTAATGTGAAATTACATAGAATAATCATATCATCAATCAGTAAGAGGCGTAAATGGGGAGAAACATTCTTTTTCCCCTTAGCCTCCTTTAGATAGTATATATTATTGTTATATATAGTTAAATCTATCATATAGTGTATAAAATGTCACTTTTTTTTGTTTTTGTTTGTAAAATTCTGCAACATATTACACAATGTAATTGCAGATAACAAAGTTGAGGAAAATACTGCACGATGAGACAGAAGAACAAAGGGTAAGGGAGTGAATGTTGTGAGAAATCTTACCTTCTTGTGTTGTAATAAAGATAGTTGAGGGAAGATACTTTATGTATGTTATAAACAAATGTTTCCTTCTTCTTCTTCTTCTTCTTTCTTGTTTTAATAACTATGATGTGATGTTTGTGAAAGCTAGACGTAAGCATTCTCTAAATTAGTGCTTTTCTTTGTGGCATATGTGTTTTTTTCT

mRNA sequence

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGA

Coding sequence (CDS)

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGA
Homology
[Close]
BLAST of CSPI03G18670.1 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]
BLAST of CSPI03G18670.1 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]
BLAST of CSPI03G18670.1 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]
BLAST of CSPI03G18670.1 vs. TrEMBL
Match: V7BV54_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G210400g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 1  MERSAVAILCLLLL-SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++ LLL+ S + +V  DAADC+DGC T CVQ+DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMMAAMMFLLLIASQMESVVPDAADCLDGCTTGCVQRDSRLQARCERKCSIRCGPDST 60

Query: 61 VEE 63
          V+E
Sbjct: 61 VKE 63

[Close]
BLAST of CSPI03G18670.1 vs. TrEMBL
Match: C6SY67_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.9e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MERSAVAILCLLLLSAVV-TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++  LL+S  + +V  DAADC DGC TACVQ DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VEEN 64
          ++E+
Sbjct: 61 IKED 64

[Close]
BLAST of CSPI03G18670.1 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 7  AILCLLLLSAVVTVSADA----ADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 62
          A+L ++ L + + + A+A     DC DGC TACVQ+D R   RC+RKC+I+CGP    E
Sbjct: 11 ALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPGKHYE 69

[Close]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 1  MERSAVA---ILCLLLLSA--VVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCG 60
          ME+SA A   ILCLLLLSA  VVTVSADAADCID CFTACVQKD+R MQRCE KC IKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

Query: 61 PDNKVEENTA 66
          PDNKV+EN A
Sbjct: 61 PDNKVDENIA 70

[Close]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match: gi|593695917|ref|XP_007148457.1| (hypothetical protein PHAVU_006G210400g [Phaseolus vulgaris])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 1  MERSAVAILCLLLL-SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++ LLL+ S + +V  DAADC+DGC T CVQ+DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMMAAMMFLLLIASQMESVVPDAADCLDGCTTGCVQRDSRLQARCERKCSIRCGPDST 60

Query: 61 VEE 63
          V+E
Sbjct: 61 VKE 63

[Close]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match: gi|255627691|gb|ACU14190.1| (unknown [Glycine max])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MERSAVAILCLLLLSAVV-TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++  LL+S  + +V  DAADC DGC TACVQ DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VEEN 64
          ++E+
Sbjct: 61 IKED 64

The following BLAST results are available for this feature:
BLAST of CSPI03G18670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC00_CUCSA5.6e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1[more]
A0A0S3S1Z0_PHAAN6.8e-1062.96Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=... [more]
A0A0L9VG55_PHAAN6.8e-1062.96Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1[more]
V7BV54_PHAVU6.8e-1055.56Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G210400g PE=4 SV=1[more]
C6SY67_SOYBN8.9e-1053.13Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of CSPI03G18670.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25275.32.6e-0845.76 unknown protein[more]
BLAST of CSPI03G18670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202418|gb|KGN57551.1|8.0e-28100.00hypothetical protein Csa_3G209970 [Cucumis sativus][more]
gi|659112190|ref|XP_008456107.1|3.0e-1980.00PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo][more]
gi|920712776|gb|KOM54025.1|9.8e-1062.96hypothetical protein LR48_Vigan09g268400 [Vigna angularis][more]
gi|593695917|ref|XP_007148457.1|9.8e-1055.56hypothetical protein PHAVU_006G210400g [Phaseolus vulgaris][more]
gi|255627691|gb|ACU14190.1|1.3e-0953.13unknown [Glycine max][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G18670CSPI03G18670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G18670.1CSPI03G18670.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18670.1.utr3p1CSPI03G18670.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18670.1.cds3CSPI03G18670.1.cds3CDS
CSPI03G18670.1.cds2CSPI03G18670.1.cds2CDS
CSPI03G18670.1.cds1CSPI03G18670.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G18670.1.utr5p1CSPI03G18670.1.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37183FAMILY NOT NAMEDcoord: 1..64
score: 2.6