CSPI02G12890.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G12890.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 13116854 .. 13117150 (+)
Sequence length	297

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

mRNA sequence

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Coding sequence (CDS)

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Homology

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BLAST of CSPI02G12890.1 vs. TrEMBL
Match: A0A0A0LLE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-42
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1


Query: 1  MSTIKVGEGELFNDDFIKLISETSLEREVNALLTVTVAAHKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELF DDFIKLISETSLEREVNALLT TVAA KAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMSKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWM+KGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

[Close]

BLAST of CSPI02G12890.1 vs. NCBI nr
Match: gi|700206750|gb|KGN61869.1| (hypothetical protein Csa_2G258650 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-42
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1


Query: 1  MSTIKVGEGELFNDDFIKLISETSLEREVNALLTVTVAAHKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELF DDFIKLISETSLEREVNALLT TVAA KAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMSKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWM+KGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

The following BLAST results are available for this feature:

BLAST of CSPI02G12890.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G12890.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLE3_CUCSA	1.5e-42	95.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1	[more]

BLAST of CSPI02G12890.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G12890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206750\|gb\|KGN61869.1\|	2.2e-42	95.92	hypothetical protein Csa_2G258650 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G12890	CSPI02G12890	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G12890.1	CSPI02G12890.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G12890.1.cds1	CSPI02G12890.1.cds1	CDS