CSPI02G12890 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G12890
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 13116854 .. 13117150 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

mRNA sequence

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Coding sequence (CDS)

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAACGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGTCACAGTCGCTGCTCACAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGAGCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Homology

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BLAST of CSPI02G12890 vs. TrEMBL
Match: A0A0A0LLE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-42
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1


Query: 1  MSTIKVGEGELFNDDFIKLISETSLEREVNALLTVTVAAHKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELF DDFIKLISETSLEREVNALLT TVAA KAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMSKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWM+KGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

[Close]

BLAST of CSPI02G12890 vs. NCBI nr
Match: gi|700206750|gb|KGN61869.1| (hypothetical protein Csa_2G258650 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-42
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1


Query: 1  MSTIKVGEGELFNDDFIKLISETSLEREVNALLTVTVAAHKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELF DDFIKLISETSLEREVNALLT TVAA KAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMSKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWM+KGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

The following BLAST results are available for this feature:

BLAST of CSPI02G12890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G12890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLE3_CUCSA	1.5e-42	95.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258650 PE=4 SV=1	[more]

BLAST of CSPI02G12890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G12890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206750\|gb\|KGN61869.1\|	2.2e-42	95.92	hypothetical protein Csa_2G258650 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G12890.1	CSPI02G12890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G12890	Csa2G258650	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G12890	CsaV3_2G015440	Cucumber (Chinese Long) v3	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G12890	Watermelon (97103) v2	cpiwmbB112
CSPI02G12890	Wax gourd	cpiwgoB181
CSPI02G12890	Wild cucumber (PI 183967)	cpicpiB089
CSPI02G12890	Cucumber (Gy14) v1	cgycpiB265
CSPI02G12890	Cucurbita maxima (Rimu)	cmacpiB441
CSPI02G12890	Cucurbita maxima (Rimu)	cmacpiB547
CSPI02G12890	Cucurbita maxima (Rimu)	cmacpiB593
CSPI02G12890	Cucurbita moschata (Rifu)	cmocpiB429
CSPI02G12890	Cucurbita moschata (Rifu)	cmocpiB500
CSPI02G12890	Cucurbita moschata (Rifu)	cmocpiB536
CSPI02G12890	Cucurbita moschata (Rifu)	cmocpiB582
CSPI02G12890	Cucumber (Chinese Long) v2	cpicuB094
CSPI02G12890	Melon (DHL92) v3.5.1	cpimeB097
CSPI02G12890	Melon (DHL92) v3.5.1	cpimeB102
CSPI02G12890	Melon (DHL92) v3.5.1	cpimeB123
CSPI02G12890	Watermelon (Charleston Gray)	cpiwcgB111
CSPI02G12890	Watermelon (Charleston Gray)	cpiwcgB131
CSPI02G12890	Watermelon (97103) v1	cpiwmB150
CSPI02G12890	Watermelon (97103) v1	cpiwmB157
CSPI02G12890	Cucurbita pepo (Zucchini)	cpecpiB269
CSPI02G12890	Cucurbita pepo (Zucchini)	cpecpiB542
CSPI02G12890	Cucurbita pepo (Zucchini)	cpecpiB706
CSPI02G12890	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G12890	Melon (DHL92) v3.6.1	cpimedB089
CSPI02G12890	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G12890	Cucumber (Gy14) v2	cgybcpiB062
CSPI02G12890	Cucumber (Gy14) v2	cgybcpiB303
CSPI02G12890	Silver-seed gourd	carcpiB0347
CSPI02G12890	Silver-seed gourd	carcpiB0468
CSPI02G12890	Silver-seed gourd	carcpiB0860