CsaV3_2G015440 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G015440
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 12913279 .. 12913575 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

mRNA sequence

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Coding sequence (CDS)

ATGAGCACTATTAAAGTTGGTGAAGGTGAATTATTTAAGGACGACTTTATAAAGTTGATAAGTGAAACATCCCTTGAGAGAGAGGTTAACGCTTTGCTCACCGGCACAGTCGCTGCTGGCAAAGCAGAGGTGAAAACCACCCTCACCAAGGGAAGGAGACTAGATTTCAGAGTGGTGGTAAAACACTTGATAGGGAGATGGATGACCAAAGGAGAATTGAGGTTGTGCACAAGAAACGGAAGGCGAGGAGGAGAAAGCAAGCGGATGAGAGTAAAAAAGAAGTTTGAAAATAGTTAG

Protein sequence

MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVVKHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS

Homology

[Close]

BLAST of CsaV3_2G015440 vs. NCBI nr
Match: KGN61869.1 (hypothetical protein Csa_2G258650 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 2.4e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

[Close]

BLAST of CsaV3_2G015440 vs. TrEMBL
Match: tr|A0A0A0LLE3|A0A0A0LLE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258650 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60
          MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV
Sbjct: 1  MSTIKVGEGELFKDDFIKLISETSLEREVNALLTGTVAAGKAEVKTTLTKGRRLDFRVVV 60

Query: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 99
          KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS
Sbjct: 61 KHLIGRWMTKGELRLCTRNGRRGGESKRMRVKKKFENS 98

The following BLAST results are available for this feature:

BLAST of CsaV3_2G015440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61869.1	2.4e-45	100.00	hypothetical protein Csa_2G258650 [Cucumis sativus]	[more]

BLAST of CsaV3_2G015440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G015440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G015440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLE3\|A0A0A0LLE3_CUCSA	1.6e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G015440.1	CsaV3_2G015440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G015440	CSPI02G12890	Wild cucumber (PI 183967)	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G015440	Cucumber (Chinese Long) v3	cuccucB098
CsaV3_2G015440	Silver-seed gourd	carcucB0346
CsaV3_2G015440	Silver-seed gourd	carcucB0463
CsaV3_2G015440	Silver-seed gourd	carcucB0863
CsaV3_2G015440	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G015440	Cucumber (Gy14) v1	cgycucB270
CsaV3_2G015440	Cucumber (Gy14) v1	cgycucB579
CsaV3_2G015440	Cucurbita maxima (Rimu)	cmacucB0137
CsaV3_2G015440	Cucurbita maxima (Rimu)	cmacucB0604
CsaV3_2G015440	Cucurbita maxima (Rimu)	cmacucB0651
CsaV3_2G015440	Cucurbita maxima (Rimu)	cmacucB0701
CsaV3_2G015440	Cucurbita moschata (Rifu)	cmocucB0113
CsaV3_2G015440	Cucurbita moschata (Rifu)	cmocucB0635
CsaV3_2G015440	Cucurbita moschata (Rifu)	cmocucB0637
CsaV3_2G015440	Cucurbita moschata (Rifu)	cmocucB0687
CsaV3_2G015440	Cucurbita pepo (Zucchini)	cpecucB0334
CsaV3_2G015440	Cucurbita pepo (Zucchini)	cpecucB0879
CsaV3_2G015440	Wild cucumber (PI 183967)	cpicucB384
CsaV3_2G015440	Bottle gourd (USVL1VR-Ls)	cuclsiB104
CsaV3_2G015440	Bottle gourd (USVL1VR-Ls)	cuclsiB109
CsaV3_2G015440	Melon (DHL92) v3.5.1	cucmeB102
CsaV3_2G015440	Melon (DHL92) v3.5.1	cucmeB106
CsaV3_2G015440	Melon (DHL92) v3.6.1	cucmedB095
CsaV3_2G015440	Melon (DHL92) v3.6.1	cucmedB099
CsaV3_2G015440	Watermelon (Charleston Gray)	cucwcgB120
CsaV3_2G015440	Watermelon (Charleston Gray)	cucwcgB140
CsaV3_2G015440	Watermelon (97103) v1	cucwmB160
CsaV3_2G015440	Watermelon (97103) v1	cucwmB166
CsaV3_2G015440	Watermelon (97103) v2	cucwmbB115
CsaV3_2G015440	Wax gourd	cucwgoB187