CSPI02G08450.2 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATGTTGTGTATATGATTGTACTCTTAGTTCAACTAAAAACAAGGGTTTCCCTTGTAATTAGTCTTATGATTATTAACGGTTGGAGGGCTCTTCTTGTTTAGCTGGGAGGGGTTCCCTCTACCCTGCTCTTAGGCTGTTCTTTTGGCTCTACTGGTTAATATTTAACCTTTGTTGCTTATAAAAAAATAATAAAGAACAATTATTTAGTAATAACATGTTTCTTTCCTCAACAAGTTATGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAGTAAGTTCACATCGACCTATTGGCTCTCAAGAATATCTTAGTTTGTTTTCATACAAGGATTATGTTTTTCTTTAAATATATATTTGAGAGAAGGTAAGTTGAAATATCTTTTGCAGCCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGGTCAGATCTTTTTCATTCTTTTATTTTTAGTTGGAATGCTACACTGTTTCCATGCATAATTGATATGAACTGATGTTTGTTGATTCCATTCCGACACTTTCCTAGAATATACATATTACTTTTGTACAAATAGTAGTTTTTTTCAGGGCAATTCTAAATATGAACCAAGTCTTGGTATCCAGACACTCAAGACTATTTACTCTTATGTTTTAGATGCATCAATTTTGCTACAGATCGTATAATCATTTTTGTACTCAATTTCCGGCTTTGGGTCCTGTCATACCCTGATGTGCAACAGATTCACGTACTTCTTCATTACCCATCATATTCTGAAAGATGGGTGGGTGTGACTTTTTTGTGCTGTCACTTTGCTCCTTGATAATGTTTTTGCCTAAGAATTATTTGATCCTACTACATTTGGCTTCTAAGAAAACTAGTAGGATATTAAATTCTTGGGTAACTTAAACTTGTTCCATCAAAACTATTTGCATTGGCTCGTGTTGACTGTTAAGCCACACACAATGGTTTAATGACATGAATTATTCCCTGTTTGTATGGTTTTTCATTTGGACTCTGGAAGGTTTGTGTTGTTTTCATAATGCTTTTTTGTGACAAGTATGACATGTTCTTCCGCATAGAATACATTCTTGTTTTTCTGATTTTCATTTCTGTAAATCTATCTACAATTTATACAAGTGAGAATACCTTTCATGTTTAAGACTTAGATGGATGGTATTAAAAGCTAAGGTTGGTCTTCGAAAGCCTTTTAAGTTGAATCAAAGTTGTAGTTTTTGTTGACTTTTTTCAATAAAGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTAAGCGCATCTTTTTACTTTTTTTCAATTTGTATCTTGGAGTACCATACCTGGATTTTATGCTATATCTGCAGATGAGTTTGGTATCCTTATTTGGCAATTCTCCTGAATGTTAATATTGCAATTTAATCCAAGTTTGAATCTTAGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGGTGAGATCATTTATTTACTAAACTTAAAATACACCTTTTTTTGTCGTCATGGCATTTGATTATAGATTATCAACTACTGATATTGATACTTTTTATGTTTGATTTAAAGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGGTATTTAGGTTCTTGTATTTTAGAAGGATGTGCTAACCCTTTGGAATTCTGTTTCAGTTAATTTTTTCTTATTCGATGAAATCCCTCAATCTAGACAAATTTATATATTGCATATTTCTCCACTCCATCTTCCTTCCAGAATTGATTGAACTACCAGAAGCTTTGCAAAGACAATCTATTTACTTCCGAGATAAATATCATAATAGTTTATATGGTACAGGGTTTACCATGAACTTTTATTGGACTTGTTTTGTAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCAGATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTATCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATTGACACGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTATATGTATTCATTTCATCTAATCAC ATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAA ATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGATGCAAGACCGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAA
BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 3.7e-64 Identity = 110/182 (60.44%), Postives = 137/182 (75.27%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2) HSP 1 Score: 241.1 bits (614), Expect = 9.2e-63 Identity = 105/179 (58.66%), Postives = 132/179 (73.74%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_MOUSE (Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 3.0e-21 Identity = 60/201 (29.85%), Postives = 90/201 (44.78%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_HUMAN (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2) HSP 1 Score: 102.4 bits (254), Expect = 5.1e-21 Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. Swiss-Prot
Match: CHRD1_RAT (Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21 Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TrEMBL
Match: A0A0A0LKX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G110230 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 9.4e-107 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TrEMBL
Match: V4U6X4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71 Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TrEMBL
Match: V4S837_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005807mg PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71 Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TrEMBL
Match: A0A067FQA4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027086mg PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 8.3e-71 Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TrEMBL
Match: Q8LL14_TOBAC (Rar1 OS=Nicotiana tabacum GN=Rar1 PE=2 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.1e-69 Identity = 125/184 (67.93%), Postives = 143/184 (77.72%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. TAIR10
Match: AT5G51700.1 (AT5G51700.1 protein binding;zinc ion binding) HSP 1 Score: 245.7 bits (626), Expect = 2.1e-65 Identity = 110/182 (60.44%), Postives = 137/182 (75.27%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus]) HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus]) HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|778668197|ref|XP_011649054.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3 [Cucumis sativus]) HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|659082603|ref|XP_008441929.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1, partial [Cucumis melo]) HSP 1 Score: 359.0 bits (920), Expect = 4.8e-96 Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1
BLAST of CSPI02G08450.2 vs. NCBI nr
Match: gi|567858172|ref|XP_006421769.1| (hypothetical protein CICLE_v10005807mg [Citrus clementina]) HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70 Identity = 125/182 (68.68%), Postives = 143/182 (78.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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