CSPI01G26490.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G26490.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Rubber elongation factor
Location	Chr1 : 21667382 .. 21669306 (-)
Sequence length	729

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTGAATAGTAATGAAGAGAATTCTAGAACCGTCCATTACTCGGATCCTTTCATCACGAACTTAACCGCTAAGGAACAGTCAACGACGTCCCTTCCGCTTTCTAAATCTACGTTTCCTCAAAACCTTCCAATTTCCCATCAATGGGCCGTCCGTTCTCACCGACTCCATTGCCGCGTTCTTCTCCTCTATAAATCCTCACTTTCCCCCTTTTTCCCTTTCCATCCATCCCTCCCTCCGTTGTATCTCCAACCATTTTCCATTCTATTTCTCCGATTACATCTTCTTCTTTTCCATTTCCGATATCAATTTTCCCTATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTTTCTTCTTAATCCCTCGAGTTTTATTCTCTAACATAATTCTCTTTCGTTTCTTCTTGGCTGGATGAATATATATTAGGTTAAATTTAGAATTTTGTATTTATGGTTTGTAATTATGGCTTACTTTGTATGATTTCTGGAGGATTTTATAAAATTTATGAGATTGTATACAATGTCATGCTTTCGTACTTTCGTATTCAAAATGGAGTCTGTACCAATTTTGCATTAGAAAGGCCCCAAGATGGATGATGGATAGTTTGTGTGTTGAAACACTTGTTATAATAGGAATTCGAAAAATTGAGTATTGAATTGAGATCGGGGCTGAACAACCGTAATTCGTTAAAGGAAACTTGATGTTTGTAGAAATTGATCTAAATTTCAGAGTCTGCAAGGGTTAGAATTGAGATTAGAAAGATTGATGTTGAAATTACAAGTAGAAAGATTTTCTGTAGTTAATCAAAGACTCAAAGCCTATGCTATTTCGCTTGAAATGATGCCAAGAACTGATGAGCATTGAGCATTAGAACATTGCGAAACAGTTTAGTTCACAGGAAACTTACTTTGTTTAATTGTAAATATGATCAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAAGACCCAAACCTGCTTCTTTTTTCTTTTATGATATTGTAAGAAAAAAAAAACACATTATGAATGTTTGGGAACTTATTCAGTGGTTATGTCACGTTTTGTTTTGTTAATATCTCGAAGTTAAGAGTTTGTACTTGTATTCGTCGTCGTGGTAGTCATCGACGAATCTACTTAGGGGCCAGAGTCGCACTTGACTCTCATTTGGTTGGTTTTTGTATTTTTAATATATATTTTAAATGCCTTCTAATAATATATACACAAAAATTCAACATAACTAATCAAATGGTGATGTAGT

mRNA sequence

ATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAA

Coding sequence (CDS)

ATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAA

Homology

[Close]

BLAST of CSPI01G26490.1 vs. Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-79
Identity = 147/237 (62.03%), Postives = 193/237 (81.43%), Query Frame = 1


Query: 4   SDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGT 63
           +DL+  + DM  + ++  LKYL+FVQ AA  A   F  +Y  AKD+SGPLKPGVE+VEG 
Sbjct: 5   TDLAQPKLDM-TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGA 64

Query: 64  VKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVA 123
           VK+VV P+Y K+H VP+EVLK++D+KVD SVT++DR VPP VKQ S+QA+ AAQ AP VA
Sbjct: 65  VKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVA 124

Query: 124 RSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFP 183
           R++ASEVRRAG+ ++ SG+ KSVY+KYEP+AK+LY+ YEPKAEQCA SAW KLNQLP+FP
Sbjct: 125 RALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFP 184

Query: 184 TVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 241
            +AQ  +PTAA+C+EKYN+TV  +A+KGY+V+SY+PLVPTERI+K+F++   E EPL
Sbjct: 185 RLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of CSPI01G26490.1 vs. Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 133/230 (57.83%), Postives = 179/230 (77.83%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+S+  +++Q   V  ++  LKYL+FVQ AA     CF ++Y YAK+ SGPLKPGV+TV
Sbjct: 1   MAESE--AKQQPETVHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+V+ P+Y KF+ VP E+L FVDRKV+ S+ +++RHVP  VK+AS QA+  AQ+AP
Sbjct: 61  EGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           E+A +VASEV+R G+ D+   I K+VY+K EP+AK+L SKYEP AEQ A SAW  LN+LP
Sbjct: 121 ELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
           +FP VAQ ++PTAAY +EKYN++V  +A++GY V+ YLPL+PTERIAKVF
Sbjct: 181 LFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVF 228

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BLAST of CSPI01G26490.1 vs. Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 112/219 (51.14%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 12  DMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPL 71
           +M   A++  L+YLEFVQ AA +        Y YAK  +GPL+PGV+ VEGTVK+VV P+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP VK+A           P +ARS A+EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEA-----------PGLARSAAAEVR 144

Query: 132 RAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILP 191
           +AGL  + +G+ KS  A+ EP A+ LY++YEP AE+ AA AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
            AA  + +YN  V   AK+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of CSPI01G26490.1 vs. Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 112/219 (51.14%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 12  DMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPL 71
           +M   A++  L+YLEFVQ AA +        Y YAK  +GPL+PGV+ VEGTVK+VV P+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP VK+A           P +ARS A+EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEA-----------PGLARSAAAEVR 144

Query: 132 RAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILP 191
           +AGL  + +G+ KS  A+ EP A+ LY++YEP AE+ AA AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
            AA  + +YN  V   AK+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of CSPI01G26490.1 vs. Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 115/192 (59.90%), Postives = 137/192 (71.35%), Query Frame = 1


Query: 42  VYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHV 101
           +Y YAK+R+GPLKPGV TVE  VK+VVAP+Y++FH VP+E+LK+ DRKV E    +DRHV
Sbjct: 6   LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 65

Query: 102 PPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKY 161
           P  VK+ SSQA           RSV SEVRR G+                  AK +YSKY
Sbjct: 66  PSNVKKVSSQA-----------RSVVSEVRRDGVSTF---------------AKTVYSKY 125

Query: 162 EPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLV 221
           EP AEQCA SAW KLNQLP+FP VA A+LP AAYCTEKYNE + +SA+KGY+VS+YLPLV
Sbjct: 126 EPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLV 167

Query: 222 PTERIAKVFSKN 234
           PTE+IAKVFS N
Sbjct: 186 PTEKIAKVFSGN 167

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BLAST of CSPI01G26490.1 vs. TrEMBL
Match: A0A0A0M1J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569430 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 2.8e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490.1 vs. TrEMBL
Match: A0A0B0Q0B4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12676 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-86
Identity = 164/242 (67.77%), Postives = 198/242 (81.82%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+RSGPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERSGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK VV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKCVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRRVPPVIKQVSTEAISAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AKQLY+KYEPKAEQCA SAW KLN+LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKQLYAKYEPKAEQCAVSAWRKLNKLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EMEPL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490.1 vs. TrEMBL
Match: A0A059D3C5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01915 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.6e-86
Identity = 165/241 (68.46%), Postives = 194/241 (80.50%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+SDL+  RQ    + ++  +KYLEFVQ AA     CF +VY YAK+RSGPLK GVETV
Sbjct: 1   MAESDLN--RQQEMTKEEEQRMKYLEFVQVAAVHTALCFVSVYAYAKERSGPLKSGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+VV P+Y KFH VPIEVLKFVDRK+DESVTKID  VPP VKQ S+QAMFAAQQAP
Sbjct: 61  EGTVKTVVGPVYVKFHDVPIEVLKFVDRKIDESVTKIDSRVPPVVKQVSAQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
             A+++A EV+RAG+ D+ SGI KSVY K EP+AK LYSKYEPK E+CA SAW KLNQLP
Sbjct: 121 VAAQAMAHEVKRAGVVDTASGIAKSVYTKCEPTAKGLYSKYEPKMEKCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           + P V Q ++PTAAYCTEKYNETVR +A+KGYKVS+YLP+VPTERIAKVF     EM+PL
Sbjct: 181 LVPHVTQVVMPTAAYCTEKYNETVRNTAEKGYKVSNYLPIVPTERIAKVFMGGAPEMQPL 239

Query: 241 V 242
           +
Sbjct: 241 L 239

[Close]

BLAST of CSPI01G26490.1 vs. TrEMBL
Match: A0A0D2PGY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300000 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 162/242 (66.94%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+R GPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERLGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKSVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRQVPPVIKQVSTEAILAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AK+LY+KYEPKAEQCA SAW KLN LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKELYAKYEPKAEQCAVSAWRKLNMLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EM+PL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMQPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490.1 vs. TrEMBL
Match: C9E7B4_MORAL (Rubber elongation factor OS=Morus alba PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.1e-85
Identity = 160/242 (66.12%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S  +Q    +A++  LKYLEF+Q A         N+YG AK++SGPLKPGVETV
Sbjct: 1   MAQEDSSFPQQMDKDKAEEQRLKYLEFIQVAVIHTIVYLSNLYGKAKEKSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y K + +PIE+LKF+DRKVD SVT++DRHVP T+KQ SSQA  AAQ+AP
Sbjct: 61  EGTVKSVVGPVYEKVYDIPIELLKFIDRKVDASVTELDRHVPATLKQVSSQAFSAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARS+ASEV+RAG+KD+ SGI K+V+ KYEP+AK+LY+KYEPKAEQCA +AW KLNQLP
Sbjct: 121 EVARSLASEVQRAGVKDTASGIAKTVFTKYEPAAKELYAKYEPKAEQCAVTAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAY TEKYN+TV ++A+KGYKVSSYLPLVP E+I KVFS+NG E EPL
Sbjct: 181 LFPKVADVVVPTAAYYTEKYNQTVISTAEKGYKVSSYLPLVPVEKIVKVFSENGAEFEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 242

[Close]

BLAST of CSPI01G26490.1 vs. TAIR10
Match: AT3G05500.1 (AT3G05500.1 Rubber elongation factor protein (REF))

HSP 1 Score: 297.4 bits (760), Expect = 8.3e-81
Identity = 147/237 (62.03%), Postives = 193/237 (81.43%), Query Frame = 1


Query: 4   SDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGT 63
           +DL+  + DM  + ++  LKYL+FVQ AA  A   F  +Y  AKD+SGPLKPGVE+VEG 
Sbjct: 5   TDLAQPKLDM-TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGA 64

Query: 64  VKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVA 123
           VK+VV P+Y K+H VP+EVLK++D+KVD SVT++DR VPP VKQ S+QA+ AAQ AP VA
Sbjct: 65  VKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVA 124

Query: 124 RSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFP 183
           R++ASEVRRAG+ ++ SG+ KSVY+KYEP+AK+LY+ YEPKAEQCA SAW KLNQLP+FP
Sbjct: 125 RALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFP 184

Query: 184 TVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 241
            +AQ  +PTAA+C+EKYN+TV  +A+KGY+V+SY+PLVPTERI+K+F++   E EPL
Sbjct: 185 RLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of CSPI01G26490.1 vs. TAIR10
Match: AT2G47780.1 (AT2G47780.1 Rubber elongation factor protein (REF))

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 97/216 (44.91%), Postives = 135/216 (62.50%), Query Frame = 1


Query: 18  DQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHG 77
           D+  LK+LEF+Q AA     CF  +Y  AKD +GPLK GVE +E  V++V+APLY KFH 
Sbjct: 37  DEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHD 96

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKD 137
           VP ++L FVDRKVD+    ++ +VP  VKQASSQA+           +VA+EV+R G+ D
Sbjct: 97  VPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVD 156

Query: 138 SVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCT 197
           +   I +SV  KYEP+A           E  AA+ W  LNQLP+FP VA  ++PTA Y +
Sbjct: 157 TTKSIARSVRDKYEPAA-----------EYYAATLWRLLNQLPLFPEVAHLVIPTAFYWS 216

Query: 198 EKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKN 234
           EKYN+ VR    + Y  + YLP++P E+I+ +  ++
Sbjct: 217 EKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQD 230

[Close]

BLAST of CSPI01G26490.1 vs. TAIR10
Match: AT1G67360.2 (AT1G67360.2 Rubber elongation factor protein (REF))

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-29
Identity = 79/212 (37.26%), Postives = 103/212 (48.58%), Query Frame = 1


Query: 21  SLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHGVPI 80
           +LK+L FV+ A         N+Y YAK  SGPLK  VE VEG V +VV P+Y KF  VP 
Sbjct: 12  ALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPD 71

Query: 81  EVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKDSVS 140
            +L F+D KV E   K D H PP  K+  +QA     +A E A+S   E R  G K + +
Sbjct: 72  SLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFN 131

Query: 141 GIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCTEKY 200
                 YA  E         Y+      +   W KLNQ      +    LP AA+ + +Y
Sbjct: 132 ------YAATE---------YKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRY 191

Query: 201 NETVRTSAKKGYKVSSYLPLVPTERIAKVFSK 233
           N+ V      GY +  YLPLVP + I K + K
Sbjct: 192 NDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208

[Close]

BLAST of CSPI01G26490.1 vs. NCBI nr
Match: gi|449435657|ref|XP_004135611.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus])

HSP 1 Score: 472.6 bits (1215), Expect = 4.1e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490.1 vs. NCBI nr
Match: gi|659099505|ref|XP_008450634.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis melo])

HSP 1 Score: 448.7 bits (1153), Expect = 6.3e-123
Identity = 231/242 (95.45%), Postives = 234/242 (96.69%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSD SSQRQDM VRAD+  LKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDHSSQRQDMAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV PL NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVK ASSQAM AAQQAP
Sbjct: 61  EGTVKSVVGPLCNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKHASSQAMSAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR+VASEVRR+GLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARNVASEVRRSGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490.1 vs. NCBI nr
Match: gi|728850786|gb|KHG30229.1| (hypothetical protein F383_12676 [Gossypium arboreum])

HSP 1 Score: 326.6 bits (836), Expect = 3.6e-86
Identity = 164/242 (67.77%), Postives = 198/242 (81.82%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+RSGPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERSGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK VV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKCVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRRVPPVIKQVSTEAISAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AKQLY+KYEPKAEQCA SAW KLN+LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKQLYAKYEPKAEQCAVSAWRKLNKLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EMEPL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490.1 vs. NCBI nr
Match: gi|702268065|ref|XP_010043058.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Eucalyptus grandis])

HSP 1 Score: 325.5 bits (833), Expect = 8.0e-86
Identity = 165/241 (68.46%), Postives = 194/241 (80.50%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+SDL+  RQ    + ++  +KYLEFVQ AA     CF +VY YAK+RSGPLK GVETV
Sbjct: 1   MAESDLN--RQQEMTKEEEQRMKYLEFVQVAAVHTALCFVSVYAYAKERSGPLKSGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+VV P+Y KFH VPIEVLKFVDRK+DESVTKID  VPP VKQ S+QAMFAAQQAP
Sbjct: 61  EGTVKTVVGPVYVKFHDVPIEVLKFVDRKIDESVTKIDSRVPPVVKQVSAQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
             A+++A EV+RAG+ D+ SGI KSVY K EP+AK LYSKYEPK E+CA SAW KLNQLP
Sbjct: 121 VAAQAMAHEVKRAGVVDTASGIAKSVYTKCEPTAKGLYSKYEPKMEKCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           + P V Q ++PTAAYCTEKYNETVR +A+KGYKVS+YLP+VPTERIAKVF     EM+PL
Sbjct: 181 LVPHVTQVVMPTAAYCTEKYNETVRNTAEKGYKVSNYLPIVPTERIAKVFMGGAPEMQPL 239

Query: 241 V 242
           +
Sbjct: 241 L 239

[Close]

BLAST of CSPI01G26490.1 vs. NCBI nr
Match: gi|823197092|ref|XP_012434168.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Gossypium raimondii])

HSP 1 Score: 324.3 bits (830), Expect = 1.8e-85
Identity = 162/242 (66.94%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+R GPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERLGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKSVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRQVPPVIKQVSTEAILAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AK+LY+KYEPKAEQCA SAW KLN LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKELYAKYEPKAEQCAVSAWRKLNMLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EM+PL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMQPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

The following BLAST results are available for this feature:

BLAST of CSPI01G26490.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3550_ARATH	1.5e-79	62.03	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1	[more]
SRP_VITRI	1.8e-69	57.83	Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1	[more]
Y5513_ORYSI	5.1e-56	51.14	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=...	[more]
Y5513_ORYSJ	5.1e-56	51.14	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]
SRP_PHAVU	1.6e-54	59.90	Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1	[more]

BLAST of CSPI01G26490.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1J0_CUCSA	2.8e-130	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569430 PE=4 SV=1	[more]
A0A0B0Q0B4_GOSAR	2.5e-86	67.77	Uncharacterized protein OS=Gossypium arboreum GN=F383_12676 PE=4 SV=1	[more]
A0A059D3C5_EUCGR	5.6e-86	68.46	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01915 PE=4 SV=1	[more]
A0A0D2PGY1_GOSRA	1.2e-85	66.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300000 PE=4 SV=1	[more]
C9E7B4_MORAL	8.1e-85	66.12	Rubber elongation factor OS=Morus alba PE=2 SV=1	[more]

BLAST of CSPI01G26490.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05500.1	8.3e-81	62.03	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	1.1e-45	44.91	Rubber elongation factor protein (REF)	[more]
AT1G67360.2	2.5e-29	37.26	Rubber elongation factor protein (REF)	[more]

BLAST of CSPI01G26490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435657\|ref\|XP_004135611.1\|	4.1e-130	100.00	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus]	[more]
gi\|659099505\|ref\|XP_008450634.1\|	6.3e-123	95.45	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis melo]	[more]
gi\|728850786\|gb\|KHG30229.1\|	3.6e-86	67.77	hypothetical protein F383_12676 [Gossypium arboreum]	[more]
gi\|702268065\|ref\|XP_010043058.1\|	8.0e-86	68.46	PREDICTED: REF/SRPP-like protein At3g05500 [Eucalyptus grandis]	[more]
gi\|823197092\|ref\|XP_012434168.1\|	1.8e-85	66.94	PREDICTED: REF/SRPP-like protein At3g05500 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008802	REF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019915	lipid storage
biological_process	GO:0006448	regulation of translational elongation
cellular_component	GO:0005811	lipid particle
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005773	vacuole
molecular_function	GO:0003746	translation elongation factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G26490	CSPI01G26490	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G26490.1	CSPI01G26490.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G26490.1.utr3p1	CSPI01G26490.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G26490.1.cds2	CSPI01G26490.1.cds2	CDS
CSPI01G26490.1.cds1	CSPI01G26490.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G26490.1.utr5p1	CSPI01G26490.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 18..231 score: 3.5
None	No IPR available	PANTHER	PTHR33732	FAMILY NOT NAMED	coord: 1..240 score: 4.4E
None	No IPR available	PANTHER	PTHR33732:SF3	SUBFAMILY NOT NAMED	coord: 1..240 score: 4.4E