CSPI06G24200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G24200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 21724441 .. 21726430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTATTTTATCATTCTTCTTCTTCTTCTTCTTCTTCTCAACAATTTAATTTGGATCTTTTCTTCCTTCTCTCCCATTTTAATTTCTTCTTCTCCTCTTTATTAGAGTTGTGTGTATATATATAAAAGAATTCTTGTAAAAATTGCTTCCCCATATTTGAGATCTTCTGTGTCATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTATATATTATTCATGCATGATGATATTTTTAAATTATAATGAATTATAATATAATTTGAATTTGAATTTAAATTTTGATGTTGTGTAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAAACCACACACAATTGAAGGTTCTATCTTCTTCTTTTTTCCCCTCAAAGTTTCCACTTACCAGCTTGTTTTTTTCCCTCCATTTATTAGCTTAGCTAGGAATGGTTTCTCAATTTTTTAAAAGAAAAATAATAATGGTTTTGGTTTGGTTTTTGAAAAAGTATAAGAGTTGGATGAGTTCTTGATTTTTTTTTATTTTGATTTTGGTTCTTAAAAAATTGTCCCAAAAATCATATAACTCATTTGACCTATGGATGTGCTGCTAGCTTTTGATAGAGTTGAACATGACGGAATTGATCGAACTAATAGTGGTTGATCATAGATAAAGGAAAGATTGGTTTTATAAAAAATAAAATATAAAATAACAACTCTTAAAAAAAAATATTAAAGATTTATTTAACCTAAACCGATTGATGATCTACCGAAGATCAACCATCGATTTACATTTCTTTTATCGAGATCAATTTAAACATTTGTTAGTTTTTGGTCGCCTTTCACCCAAAAAATCAAATTAAAATTGGTTAGAAATTTCGCAAACCATGCAATAAAATTAAAGTTTTTTTTCTTTTCTATTTTAAGTGTTTTCAAGAACATTAAAAAAATAATTATTTTATTAATTTAAAAAAATATTTTAAAATATAATAAAATAAACCAAAATATTTATAAAATATCCTAAAAATTCATATTTATAAAAGTTTACTGTGTCTATAATTAGTATTTGATATATTCTGAAATTTAATTATATTTTCTAAATATTTTAAGTAGTTTCGTCATTTACAATAAATTTTTTGAATAAATATCATATAAAAAACATAACATAGTTGGATGCAAAAATTAAGAGAATGTAAAGGAAATTCAAACATACAAACATCTTATTTATTTTCTAAAGAAAAAAGAAAAAAAAAAGTGTAAAGGTTAGTAAATCTTTAAATATAAATCTAACCATAACATTATTGGTGGAGAAATATGTCTTTATCAAAATTTAATTAAGGTTCTCTTTTGAGATCATTAATACATTGCAAAATTTTCAACCTCAAATCTTAAAGATGCAATAAAATATGTCATATCAATGTAATTAATAGATGAAGTTATTATATAACGATAACTAAAACATCAAACTTTTTTTCTTTGTTGATATAACAATTACGTCGACGGAAGAATAAAAAATTGATATATGATTATTATTTTCACACAAAAACATGTGACATAGAGATGATAATTAGCATATCAACAACACAATTAGCAAGAAGTAGGTAAGATGAATTGATTAGTAATGATTAAGTTTTTCTTTAAAAGAGTTGTTTAATTTCATGAATATTTTCTTCACACTACATAATAAAATAAAATAAAAGATGATGTTTATATTTAGTTTTCCAATTATTGTGTTTACTTGTGCAGGGAAGCAAAGTGGGTGAATGGTTAAAGAAGTTTTGGAATTAAAGCAATG

mRNA sequence

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Coding sequence (CDS)

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Homology

[Close]

BLAST of CSPI06G24200 vs. TrEMBL
Match: A0A0A0KIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]

BLAST of CSPI06G24200 vs. TrEMBL
Match: W9S7U8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]

BLAST of CSPI06G24200 vs. TrEMBL
Match: V4SN08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200 vs. TrEMBL
Match: A0A067D620_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200 vs. TrEMBL
Match: B9IJ14_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-06
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + ++T+F LFLL  TP +S      +++        VYEIDYRGPETHSS  + PP
Sbjct: 1  MELKSSISTVFLLFLLLVTPHISRGGSEVADSE-------VYEIDYRGPETHSS-VMPPP 60

Query: 61 DHSHGRRPWI 71
           H HG RPWI
Sbjct: 61 GHFHG-RPWI 61

[Close]

BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|700192928|gb|KGN48132.1| (hypothetical protein Csa_6G444970 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]

BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|659096763|ref|XP_008449275.1| (PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 8.0e-34
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 1   MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDD-----------IVYEIDYRGP 60
           MEIVNFMTTMFFLFLLA TPS++SSEG +SE +NGGIDD            VYEIDYRGP
Sbjct: 25  MEIVNFMTTMFFLFLLA-TPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 84

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPK-QPNSLDPTP 92
           ETHSSHHISPPDHSHGRRPWIIHHH HQLLQPK Q NSL+PTP
Sbjct: 85  ETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 126

[Close]

BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|703141717|ref|XP_010107572.1| (hypothetical protein L484_024428 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]

BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|567872485|ref|XP_006428832.1| (hypothetical protein CICLE_v10013224mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|641810691|gb|KDO36990.1| (hypothetical protein CISIN_1g034723mg [Citrus sinensis])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

The following BLAST results are available for this feature:

BLAST of CSPI06G24200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G24200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB6_CUCSA	1.7e-46	98.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1	[more]
W9S7U8_9ROSA	5.3e-08	52.33	Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1	[more]
V4SN08_9ROSI	6.9e-08	56.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1	[more]
A0A067D620_CITSI	6.9e-08	56.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1	[more]
B9IJ14_POPTR	4.9e-06	48.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1	[more]

BLAST of CSPI06G24200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G24200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192928\|gb\|KGN48132.1\|	2.4e-46	98.92	hypothetical protein Csa_6G444970 [Cucumis sativus]	[more]
gi\|659096763\|ref\|XP_008449275.1\|	8.0e-34	77.67	PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo]	[more]
gi\|703141717\|ref\|XP_010107572.1\|	7.6e-08	52.33	hypothetical protein L484_024428 [Morus notabilis]	[more]
gi\|567872485\|ref\|XP_006428832.1\|	9.9e-08	56.16	hypothetical protein CICLE_v10013224mg [Citrus clementina]	[more]
gi\|641810691\|gb\|KDO36990.1\|	9.9e-08	56.16	hypothetical protein CISIN_1g034723mg [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G24200.1	CSPI06G24200.1	mRNA
CSPI06G24200.2	CSPI06G24200.2	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G24200	Csa6G444970	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G24200	MELO3C014256.2	Melon (DHL92) v3.6.1	cpimedB479
CSPI06G24200	CsaV3_6G039370	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G24200	Cucsa.124210	Cucumber (Gy14) v1	cgycpiB168
CSPI06G24200	Carg15282	Silver-seed gourd	carcpiB0585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G24200	Cucumber (Chinese Long) v3	cpicucB334
CSPI06G24200	Watermelon (97103) v2	cpiwmbB442
CSPI06G24200	Watermelon (97103) v2	cpiwmbB479
CSPI06G24200	Wax gourd	cpiwgoB532
CSPI06G24200	Wax gourd	cpiwgoB630
CSPI06G24200	Wild cucumber (PI 183967)	cpicpiB124
CSPI06G24200	Cucumber (Gy14) v1	cgycpiB462
CSPI06G24200	Cucurbita maxima (Rimu)	cmacpiB271
CSPI06G24200	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G24200	Cucurbita maxima (Rimu)	cmacpiB857
CSPI06G24200	Cucurbita moschata (Rifu)	cmocpiB259
CSPI06G24200	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G24200	Cucurbita moschata (Rifu)	cmocpiB838
CSPI06G24200	Cucumber (Chinese Long) v2	cpicuB282
CSPI06G24200	Melon (DHL92) v3.5.1	cpimeB487
CSPI06G24200	Melon (DHL92) v3.5.1	cpimeB492
CSPI06G24200	Watermelon (Charleston Gray)	cpiwcgB444
CSPI06G24200	Watermelon (Charleston Gray)	cpiwcgB488
CSPI06G24200	Watermelon (97103) v1	cpiwmB467
CSPI06G24200	Cucurbita pepo (Zucchini)	cpecpiB081
CSPI06G24200	Cucurbita pepo (Zucchini)	cpecpiB627
CSPI06G24200	Cucurbita pepo (Zucchini)	cpecpiB880
CSPI06G24200	Bottle gourd (USVL1VR-Ls)	cpilsiB440
CSPI06G24200	Bottle gourd (USVL1VR-Ls)	cpilsiB452
CSPI06G24200	Melon (DHL92) v3.6.1	cpimedB473
CSPI06G24200	Cucumber (Gy14) v2	cgybcpiB140
CSPI06G24200	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G24200	Silver-seed gourd	carcpiB0187
CSPI06G24200	Silver-seed gourd	carcpiB0282