CSPI06G24200.2 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G24200.2
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 21724441 .. 21725061 (+)
Sequence length	282

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTATTTTATCATTCTTCTTCTTCTTCTTCTTCTTCTCAACAATTTAATTTGGATCTTTTCTTCCTTCTCTCCCATTTTAATTTCTTCTTCTCCTCTTTATTAGAGTTGTGTGTATATATATAAAAGAATTCTTGTAAAAATTGCTTCCCCATATTTGAGATCTTCTGTGTCATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTATATATTATTCATGCATGATGATATTTTTAAATTATAATGAATTATAATATAATTTGAATTTGAATTTAAATTTTGATGTTGTGTAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAAACCACACACAATTGAAGGTTCTATCTTCTTCTTTTTTCCCCTCAAAGTTTCCACTTACCAGCTTGTTTTTTTCCC

mRNA sequence

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Coding sequence (CDS)

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Homology

[Close]

BLAST of CSPI06G24200.2 vs. TrEMBL
Match: A0A0A0KIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]

BLAST of CSPI06G24200.2 vs. TrEMBL
Match: W9S7U8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]

BLAST of CSPI06G24200.2 vs. TrEMBL
Match: V4SN08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200.2 vs. TrEMBL
Match: A0A067D620_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200.2 vs. TrEMBL
Match: B9IJ14_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-06
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + ++T+F LFLL  TP +S      +++        VYEIDYRGPETHSS  + PP
Sbjct: 1  MELKSSISTVFLLFLLLVTPHISRGGSEVADSE-------VYEIDYRGPETHSS-VMPPP 60

Query: 61 DHSHGRRPWI 71
           H HG RPWI
Sbjct: 61 GHFHG-RPWI 61

[Close]

BLAST of CSPI06G24200.2 vs. NCBI nr
Match: gi|700192928|gb|KGN48132.1| (hypothetical protein Csa_6G444970 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]

BLAST of CSPI06G24200.2 vs. NCBI nr
Match: gi|659096763|ref|XP_008449275.1| (PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 8.0e-34
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 1   MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDD-----------IVYEIDYRGP 60
           MEIVNFMTTMFFLFLLA TPS++SSEG +SE +NGGIDD            VYEIDYRGP
Sbjct: 25  MEIVNFMTTMFFLFLLA-TPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 84

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPK-QPNSLDPTP 92
           ETHSSHHISPPDHSHGRRPWIIHHH HQLLQPK Q NSL+PTP
Sbjct: 85  ETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 126

[Close]

BLAST of CSPI06G24200.2 vs. NCBI nr
Match: gi|703141717|ref|XP_010107572.1| (hypothetical protein L484_024428 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]

BLAST of CSPI06G24200.2 vs. NCBI nr
Match: gi|567872485|ref|XP_006428832.1| (hypothetical protein CICLE_v10013224mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]

BLAST of CSPI06G24200.2 vs. NCBI nr
Match: gi|641810691|gb|KDO36990.1| (hypothetical protein CISIN_1g034723mg [Citrus sinensis])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

The following BLAST results are available for this feature:

BLAST of CSPI06G24200.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G24200.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB6_CUCSA	1.7e-46	98.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1	[more]
W9S7U8_9ROSA	5.3e-08	52.33	Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1	[more]
V4SN08_9ROSI	6.9e-08	56.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1	[more]
A0A067D620_CITSI	6.9e-08	56.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1	[more]
B9IJ14_POPTR	4.9e-06	48.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1	[more]

BLAST of CSPI06G24200.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G24200.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192928\|gb\|KGN48132.1\|	2.4e-46	98.92	hypothetical protein Csa_6G444970 [Cucumis sativus]	[more]
gi\|659096763\|ref\|XP_008449275.1\|	8.0e-34	77.67	PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo]	[more]
gi\|703141717\|ref\|XP_010107572.1\|	7.6e-08	52.33	hypothetical protein L484_024428 [Morus notabilis]	[more]
gi\|567872485\|ref\|XP_006428832.1\|	9.9e-08	56.16	hypothetical protein CICLE_v10013224mg [Citrus clementina]	[more]
gi\|641810691\|gb\|KDO36990.1\|	9.9e-08	56.16	hypothetical protein CISIN_1g034723mg [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G24200	CSPI06G24200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G24200.2	CSPI06G24200.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G24200.2.utr5p1	CSPI06G24200.2.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G24200.2.cds1	CSPI06G24200.2.cds1	CDS
CSPI06G24200.2.cds2	CSPI06G24200.2.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G24200.2.utr3p1	CSPI06G24200.2.utr3p1	three_prime_UTR