CSPI06G24200 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G24200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 21724441 .. 21726430 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATTATTTTATCATTCTTCTTCTTCTTCTTCTTCTTCTCAACAATTTAATTTGGATCTTTTCTTCCTTCTCTCCCATTTTAATTTCTTCTTCTCCTCTTTATTAGAGTTGTGTGTATATATATAAAAGAATTCTTGTAAAAATTGCTTCCCCATATTTGAGATCTTCTGTGTCATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTATATATTATTCATGCATGATGATATTTTTAAATTATAATGAATTATAATATAATTTGAATTTGAATTTAAATTTTGATGTTGTGTAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAAACCACACACAATTGAAGGTTCTATCTTCTTCTTTTTTCCCCTCAAAGTTTCCACTTACCAGCTTGTTTTTTTCCCTCCATTTATTAGCTTAGCTAGGAATGGTTTCTCAATTTTTTAAAAGAAAAATAATAATGGTTTTGGTTTGGTTTTTGAAAAAGTATAAGAGTTGGATGAGTTCTTGATTTTTTTTTATTTTGATTTTGGTTCTTAAAAAATTGTCCCAAAAATCATATAACTCATTTGACCTATGGATGTGCTGCTAGCTTTTGATAGAGTTGAACATGACGGAATTGATCGAACTAATAGTGGTTGATCATAGATAAAGGAAAGATTGGTTTTATAAAAAATAAAATATAAAATAACAACTCTTAAAAAAAAATATTAAAGATTTATTTAACCTAAACCGATTGATGATCTACCGAAGATCAACCATCGATTTACATTTCTTTTATCGAGATCAATTTAAACATTTGTTAGTTTTTGGTCGCCTTTCACCCAAAAAATCAAATTAAAATTGGTTAGAAATTTCGCAAACCATGCAATAAAATTAAAGTTTTTTTTCTTTTCTATTTTAAGTGTTTTCAAGAACATTAAAAAAATAATTATTTTATTAATTTAAAAAAATATTTTAAAATATAATAAAATAAACCAAAATATTTATAAAATATCCTAAAAATTCATATTTATAAAAGTTTACTGTGTCTATAATTAGTATTTGATATATTCTGAAATTTAATTATATTTTCTAAATATTTTAAGTAGTTTCGTCATTTACAATAAATTTTTTGAATAAATATCATATAAAAAACATAACATAGTTGGATGCAAAAATTAAGAGAATGTAAAGGAAATTCAAACATACAAACATCTTATTTATTTTCTAAAGAAAAAAGAAAAAAAAAAGTGTAAAGGTTAGTAAATCTTTAAATATAAATCTAACCATAACATTATTGGTGGAGAAATATGTCTTTATCAAAATTTAATTAAGGTTCTCTTTTGAGATCATTAATACATTGCAAAATTTTCAACCTCAAATCTTAAAGATGCAATAAAATATGTCATATCAATGTAATTAATAGATGAAGTTATTATATAACGATAACTAAAACATCAAACTTTTTTTCTTTGTTGATATAACAATTACGTCGACGGAAGAATAAAAAATTGATATATGATTATTATTTTCACACAAAAACATGTGACATAGAGATGATAATTAGCATATCAACAACACAATTAGCAAGAAGTAGGTAAGATGAATTGATTAGTAATGATTAAGTTTTTCTTTAAAAGAGTTGTTTAATTTCATGAATATTTTCTTCACACTACATAATAAAATAAAATAAAAGATGATGTTTATATTTAGTTTTCCAATTATTGTGTTTACTTGTGCAGGGAAGCAAAGTGGGTGAATGGTTAAAGAAGTTTTGGAATTAAAGCAATG

mRNA sequence

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Coding sequence (CDS)

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTGAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA
Homology
[Close]
BLAST of CSPI06G24200 vs. TrEMBL
Match: A0A0A0KIB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]
BLAST of CSPI06G24200 vs. TrEMBL
Match: W9S7U8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]
BLAST of CSPI06G24200 vs. TrEMBL
Match: V4SN08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]
BLAST of CSPI06G24200 vs. TrEMBL
Match: A0A067D620_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]
BLAST of CSPI06G24200 vs. TrEMBL
Match: B9IJ14_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-06
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + ++T+F LFLL  TP +S      +++        VYEIDYRGPETHSS  + PP
Sbjct: 1  MELKSSISTVFLLFLLLVTPHISRGGSEVADSE-------VYEIDYRGPETHSS-VMPPP 60

Query: 61 DHSHGRRPWI 71
           H HG RPWI
Sbjct: 61 GHFHG-RPWI 61

[Close]
BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|700192928|gb|KGN48132.1| (hypothetical protein Csa_6G444970 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSS+GRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

[Close]
BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|659096763|ref|XP_008449275.1| (PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 8.0e-34
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 1   MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDD-----------IVYEIDYRGP 60
           MEIVNFMTTMFFLFLLA TPS++SSEG +SE +NGGIDD            VYEIDYRGP
Sbjct: 25  MEIVNFMTTMFFLFLLA-TPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 84

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPK-QPNSLDPTP 92
           ETHSSHHISPPDHSHGRRPWIIHHH HQLLQPK Q NSL+PTP
Sbjct: 85  ETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 126

[Close]
BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|703141717|ref|XP_010107572.1| (hypothetical protein L484_024428 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ +  TT+FFLFL AA P  S  E   + +SN      VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSCFTTIFFLFLFAA-PYFSRGEYSDALDSNE-----VYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNS 87
          DHSHG +PWI  H       P  P S
Sbjct: 61 DHSHG-KPWI--HKESSWGHPNYPKS 75

[Close]
BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|567872485|ref|XP_006428832.1| (hypothetical protein CICLE_v10013224mg [Citrus clementina])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

[Close]
BLAST of CSPI06G24200 vs. NCBI nr
Match: gi|641810691|gb|KDO36990.1| (hypothetical protein CISIN_1g034723mg [Citrus sinensis])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSEGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          ME+ + +TT F LFLL ATP  S   G   E     +D  VYEIDYRGPETHSS  I PP
Sbjct: 1  MELKSSITTFFLLFLLFATPFCSL--GGLPE-----LDSEVYEIDYRGPETHSS--IPPP 60

Query: 61 DHSHGRRPWIIHH 74
          DHSHGR   +I H
Sbjct: 61 DHSHGRGKPVIRH 64

The following BLAST results are available for this feature:
BLAST of CSPI06G24200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G24200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIB6_CUCSA1.7e-4698.92Uncharacterized protein OS=Cucumis sativus GN=Csa_6G444970 PE=4 SV=1[more]
W9S7U8_9ROSA5.3e-0852.33Uncharacterized protein OS=Morus notabilis GN=L484_024428 PE=4 SV=1[more]
V4SN08_9ROSI6.9e-0856.16Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013224mg PE=4 SV=1[more]
A0A067D620_CITSI6.9e-0856.16Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034723mg PE=4 SV=1[more]
B9IJ14_POPTR4.9e-0648.57Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08840g PE=4 SV=1[more]
BLAST of CSPI06G24200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G24200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192928|gb|KGN48132.1|2.4e-4698.92hypothetical protein Csa_6G444970 [Cucumis sativus][more]
gi|659096763|ref|XP_008449275.1|8.0e-3477.67PREDICTED: uncharacterized protein LOC103491202 [Cucumis melo][more]
gi|703141717|ref|XP_010107572.1|7.6e-0852.33hypothetical protein L484_024428 [Morus notabilis][more]
gi|567872485|ref|XP_006428832.1|9.9e-0856.16hypothetical protein CICLE_v10013224mg [Citrus clementina][more]
gi|641810691|gb|KDO36990.1|9.9e-0856.16hypothetical protein CISIN_1g034723mg [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G24200.1CSPI06G24200.1mRNA
CSPI06G24200.2CSPI06G24200.2mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G24200Csa6G444970Cucumber (Chinese Long) v2cpicuB313
CSPI06G24200MELO3C014256.2Melon (DHL92) v3.6.1cpimedB479
CSPI06G24200CsaV3_6G039370Cucumber (Chinese Long) v3cpicucB363
CSPI06G24200Cucsa.124210Cucumber (Gy14) v1cgycpiB168
CSPI06G24200Carg15282Silver-seed gourdcarcpiB0585
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G24200Wild cucumber (PI 183967)cpicpiB124
CSPI06G24200Cucumber (Gy14) v1cgycpiB462
CSPI06G24200Cucurbita maxima (Rimu)cmacpiB271
CSPI06G24200Cucurbita maxima (Rimu)cmacpiB689
CSPI06G24200Cucurbita maxima (Rimu)cmacpiB857
CSPI06G24200Cucurbita moschata (Rifu)cmocpiB259
CSPI06G24200Cucurbita moschata (Rifu)cmocpiB681
CSPI06G24200Cucurbita moschata (Rifu)cmocpiB838
CSPI06G24200Cucumber (Chinese Long) v2cpicuB282
CSPI06G24200Melon (DHL92) v3.5.1cpimeB487
CSPI06G24200Melon (DHL92) v3.5.1cpimeB492
CSPI06G24200Watermelon (Charleston Gray)cpiwcgB444
CSPI06G24200Watermelon (Charleston Gray)cpiwcgB488
CSPI06G24200Watermelon (97103) v1cpiwmB467
CSPI06G24200Cucurbita pepo (Zucchini)cpecpiB081
CSPI06G24200Cucurbita pepo (Zucchini)cpecpiB627
CSPI06G24200Cucurbita pepo (Zucchini)cpecpiB880
CSPI06G24200Bottle gourd (USVL1VR-Ls)cpilsiB440
CSPI06G24200Bottle gourd (USVL1VR-Ls)cpilsiB452
CSPI06G24200Melon (DHL92) v3.6.1cpimedB473
CSPI06G24200Cucumber (Gy14) v2cgybcpiB140
CSPI06G24200Cucumber (Gy14) v2cgybcpiB287
CSPI06G24200Silver-seed gourdcarcpiB0187
CSPI06G24200Silver-seed gourdcarcpiB0282
CSPI06G24200Cucumber (Chinese Long) v3cpicucB334
CSPI06G24200Watermelon (97103) v2cpiwmbB442
CSPI06G24200Watermelon (97103) v2cpiwmbB479
CSPI06G24200Wax gourdcpiwgoB532
CSPI06G24200Wax gourdcpiwgoB630