CSPI06G21680 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G21680
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6 : 19622457 .. 19622726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

mRNA sequence

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Coding sequence (CDS)

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Homology

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BLAST of CSPI06G21680 vs. TrEMBL
Match: A0A0A0KHJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407130 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
          MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 60

Query: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
          EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 89

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BLAST of CSPI06G21680 vs. TrEMBL
Match: M1AT88_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011408 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 5  HPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQR 64
          H +S  VEL+N+ +VP +KKNL+ VSQLT  GN+ +F P+D+KVY NLKV+ T ++EG+R
Sbjct: 14 HNSSRQVELQNIYHVPGMKKNLLYVSQLTDSGNYVLFGPNDIKVYRNLKVTSTPIMEGKR 73

Query: 65 MDFIYAMLVEVAYVNKTQKNETTD 89
          ++ IY M  E  YV KT+ NET D
Sbjct: 74 LESIYVMSAETTYVEKTRSNETAD 97

[Close]

BLAST of CSPI06G21680 vs. TrEMBL
Match: A5C7V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041886 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 43/88 (48.86%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+F +F P D+KVY +L++ + S++
Sbjct: 241 VVSSQYNTNDVSLQNVYHVPSMKKNLLSVAQLTSSGHFVLFGPQDMKVYRDLEIMEESVI 300

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 301 KGRRLESVYVMFAETAYVDKTRKNETAD 328

[Close]

BLAST of CSPI06G21680 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+  +F P DVKVYH+L+V +  ++
Sbjct: 367 VVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSGHSVLFGPQDVKVYHDLEVMEEPVI 426

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 427 KGRRLESVYVMSAETAYVDKTRKNETAD 454

[Close]

BLAST of CSPI06G21680 vs. TrEMBL
Match: A0A0V0IRJ7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-17
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 5   HPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQR 64
           H +   VEL+N+ +VP +KKNL+ VSQLT  GN+ +F P+D+KVY NLKV+ T ++E +R
Sbjct: 22  HHSLRQVELQNIYHVPGIKKNLLYVSQLTDSGNYVLFGPNDIKVYRNLKVTSTPIMEERR 81

Query: 65  MDFIYAMLVEVAYVNKTQKNETTD 89
           ++ IY M  E  YV KT+ NET D
Sbjct: 82  LESIYVMSAETTYVEKTRSNETAD 105

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: gi|700192648|gb|KGN47852.1| (hypothetical protein Csa_6G407130 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
          MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 60

Query: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
          EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 89

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: gi|659130452|ref|XP_008465179.1| (PREDICTED: uncharacterized protein LOC103502843 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMDFIY M  E AYVNKT+KNET D
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVD 265

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: gi|658029306|ref|XP_008350102.1| (PREDICTED: glutamate receptor 2.8-like [Malus domestica])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-18
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1    MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
            +I P  N+NHV L++V +VP +KKNL+SV  LTS+GN+ +F P DVKVY +LK+  T  +
Sbjct: 1014 VIEPRYNTNHVPLQDVYHVPGMKKNLLSVLHLTSLGNYVLFGPRDVKVYRHLKILGTPTM 1073

Query: 61   EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
            EG+R+  +Y M  E AYV+K +KNET D
Sbjct: 1074 EGRRLQLVYVMSAETAYVDKIRKNETKD 1101

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: gi|147863426|emb|CAN79781.1| (hypothetical protein VITISV_041886 [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 43/88 (48.86%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+F +F P D+KVY +L++ + S++
Sbjct: 241 VVSSQYNTNDVSLQNVYHVPSMKKNLLSVAQLTSSGHFVLFGPQDMKVYRDLEIMEESVI 300

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 301 KGRRLESVYVMFAETAYVDKTRKNETAD 328

[Close]

BLAST of CSPI06G21680 vs. NCBI nr
Match: gi|694430965|ref|XP_009342933.1| (PREDICTED: uncharacterized protein LOC103934897 [Pyrus x bretschneideri])

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 45/88 (51.14%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +I P  ++NHV L++V +VP +KKNL+SV QLTS+ N+ +F P DVKVY +LK+  T  +
Sbjct: 512 VIEPRYSTNHVPLQDVYHVPGMKKNLLSVPQLTSLRNYVLFGPRDVKVYRHLKILRTPTM 571

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EGQR+  +Y M  E AY++KT+KN+T D
Sbjct: 572 EGQRLQSVYVMSAETAYIDKTRKNKTAD 599

The following BLAST results are available for this feature:

BLAST of CSPI06G21680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G21680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHJ1_CUCSA	2.4e-42	98.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407130 PE=4 SV=1	[more]
M1AT88_SOLTU	1.1e-18	53.57	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011408 PE=4 SV=1	[more]
A5C7V8_VITVI	3.2e-18	48.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041886 PE=4 SV=1	[more]
A5AKW8_VITVI	9.2e-18	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1	[more]
A0A0V0IRJ7_SOLCH	2.7e-17	51.19	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CSPI06G21680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G21680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192648\|gb\|KGN47852.1\|	3.4e-42	98.88	hypothetical protein Csa_6G407130 [Cucumis sativus]	[more]
gi\|659130452\|ref\|XP_008465179.1\|	1.1e-27	70.45	PREDICTED: uncharacterized protein LOC103502843 [Cucumis melo]	[more]
gi\|658029306\|ref\|XP_008350102.1\|	2.7e-18	52.27	PREDICTED: glutamate receptor 2.8-like [Malus domestica]	[more]
gi\|147863426\|emb\|CAN79781.1\|	4.5e-18	48.86	hypothetical protein VITISV_041886 [Vitis vinifera]	[more]
gi\|694430965\|ref\|XP_009342933.1\|	7.7e-18	51.14	PREDICTED: uncharacterized protein LOC103934897 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G21680.1	CSPI06G21680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G21680	Csa6G407130	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G21680	CsaV3_6G036770	Cucumber (Chinese Long) v3	cpicucB363

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G21680	Watermelon (97103) v2	cpiwmbB512
CSPI06G21680	Wax gourd	cpiwgoB572
CSPI06G21680	Watermelon (97103) v1	cpiwmB500
CSPI06G21680	Cucumber (Gy14) v1	cgycpiB200
CSPI06G21680	Cucurbita maxima (Rimu)	cmacpiB632
CSPI06G21680	Cucurbita moschata (Rifu)	cmocpiB625
CSPI06G21680	Melon (DHL92) v3.5.1	cpimeB494
CSPI06G21680	Watermelon (Charleston Gray)	cpiwcgB521
CSPI06G21680	Bottle gourd (USVL1VR-Ls)	cpilsiB472
CSPI06G21680	Melon (DHL92) v3.6.1	cpimedB481
CSPI06G21680	Cucumber (Gy14) v2	cgybcpiB287