CSPI06G21680.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G21680.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6 : 19622457 .. 19622726 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

mRNA sequence

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Coding sequence (CDS)

ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAACTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAGAGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG

Homology

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BLAST of CSPI06G21680.1 vs. TrEMBL
Match: A0A0A0KHJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407130 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
          MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 60

Query: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
          EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 89

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BLAST of CSPI06G21680.1 vs. TrEMBL
Match: M1AT88_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011408 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 5  HPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQR 64
          H +S  VEL+N+ +VP +KKNL+ VSQLT  GN+ +F P+D+KVY NLKV+ T ++EG+R
Sbjct: 14 HNSSRQVELQNIYHVPGMKKNLLYVSQLTDSGNYVLFGPNDIKVYRNLKVTSTPIMEGKR 73

Query: 65 MDFIYAMLVEVAYVNKTQKNETTD 89
          ++ IY M  E  YV KT+ NET D
Sbjct: 74 LESIYVMSAETTYVEKTRSNETAD 97

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BLAST of CSPI06G21680.1 vs. TrEMBL
Match: A5C7V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041886 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 43/88 (48.86%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+F +F P D+KVY +L++ + S++
Sbjct: 241 VVSSQYNTNDVSLQNVYHVPSMKKNLLSVAQLTSSGHFVLFGPQDMKVYRDLEIMEESVI 300

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 301 KGRRLESVYVMFAETAYVDKTRKNETAD 328

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BLAST of CSPI06G21680.1 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+  +F P DVKVYH+L+V +  ++
Sbjct: 367 VVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSGHSVLFGPQDVKVYHDLEVMEEPVI 426

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 427 KGRRLESVYVMSAETAYVDKTRKNETAD 454

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BLAST of CSPI06G21680.1 vs. TrEMBL
Match: A0A0V0IRJ7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-17
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 5   HPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQR 64
           H +   VEL+N+ +VP +KKNL+ VSQLT  GN+ +F P+D+KVY NLKV+ T ++E +R
Sbjct: 22  HHSLRQVELQNIYHVPGIKKNLLYVSQLTDSGNYVLFGPNDIKVYRNLKVTSTPIMEERR 81

Query: 65  MDFIYAMLVEVAYVNKTQKNETTD 89
           ++ IY M  E  YV KT+ NET D
Sbjct: 82  LESIYVMSAETTYVEKTRSNETAD 105

[Close]

BLAST of CSPI06G21680.1 vs. NCBI nr
Match: gi|700192648|gb|KGN47852.1| (hypothetical protein Csa_6G407130 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
          MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLL
Sbjct: 1  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFSVFRPDDVKVYHNLKVSDTSLL 60

Query: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 90
          EGQRMDFIYAMLVEVAYVNKTQKNETTDF
Sbjct: 61 EGQRMDFIYAMLVEVAYVNKTQKNETTDF 89

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BLAST of CSPI06G21680.1 vs. NCBI nr
Match: gi|659130452|ref|XP_008465179.1| (PREDICTED: uncharacterized protein LOC103502843 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+
Sbjct: 178 MIVPRSNFNQVELDNVFYVPGMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLI 237

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EG+RMDFIY M  E AYVNKT+KNET D
Sbjct: 238 EGRRMDFIYVMSAETAYVNKTRKNETVD 265

[Close]

BLAST of CSPI06G21680.1 vs. NCBI nr
Match: gi|658029306|ref|XP_008350102.1| (PREDICTED: glutamate receptor 2.8-like [Malus domestica])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-18
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 1    MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
            +I P  N+NHV L++V +VP +KKNL+SV  LTS+GN+ +F P DVKVY +LK+  T  +
Sbjct: 1014 VIEPRYNTNHVPLQDVYHVPGMKKNLLSVLHLTSLGNYVLFGPRDVKVYRHLKILGTPTM 1073

Query: 61   EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
            EG+R+  +Y M  E AYV+K +KNET D
Sbjct: 1074 EGRRLQLVYVMSAETAYVDKIRKNETKD 1101

[Close]

BLAST of CSPI06G21680.1 vs. NCBI nr
Match: gi|147863426|emb|CAN79781.1| (hypothetical protein VITISV_041886 [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 43/88 (48.86%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +++   N+N V L+NV +VP +KKNL+SV+QLTS G+F +F P D+KVY +L++ + S++
Sbjct: 241 VVSSQYNTNDVSLQNVYHVPSMKKNLLSVAQLTSSGHFVLFGPQDMKVYRDLEIMEESVI 300

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           +G+R++ +Y M  E AYV+KT+KNET D
Sbjct: 301 KGRRLESVYVMFAETAYVDKTRKNETAD 328

[Close]

BLAST of CSPI06G21680.1 vs. NCBI nr
Match: gi|694430965|ref|XP_009342933.1| (PREDICTED: uncharacterized protein LOC103934897 [Pyrus x bretschneideri])

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 45/88 (51.14%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 1   MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLL 60
           +I P  ++NHV L++V +VP +KKNL+SV QLTS+ N+ +F P DVKVY +LK+  T  +
Sbjct: 512 VIEPRYSTNHVPLQDVYHVPGMKKNLLSVPQLTSLRNYVLFGPRDVKVYRHLKILRTPTM 571

Query: 61  EGQRMDFIYAMLVEVAYVNKTQKNETTD 89
           EGQR+  +Y M  E AY++KT+KN+T D
Sbjct: 572 EGQRLQSVYVMSAETAYIDKTRKNKTAD 599

The following BLAST results are available for this feature:

BLAST of CSPI06G21680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G21680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHJ1_CUCSA	2.4e-42	98.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G407130 PE=4 SV=1	[more]
M1AT88_SOLTU	1.1e-18	53.57	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011408 PE=4 SV=1	[more]
A5C7V8_VITVI	3.2e-18	48.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041886 PE=4 SV=1	[more]
A5AKW8_VITVI	9.2e-18	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1	[more]
A0A0V0IRJ7_SOLCH	2.7e-17	51.19	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CSPI06G21680.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G21680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192648\|gb\|KGN47852.1\|	3.4e-42	98.88	hypothetical protein Csa_6G407130 [Cucumis sativus]	[more]
gi\|659130452\|ref\|XP_008465179.1\|	1.1e-27	70.45	PREDICTED: uncharacterized protein LOC103502843 [Cucumis melo]	[more]
gi\|658029306\|ref\|XP_008350102.1\|	2.7e-18	52.27	PREDICTED: glutamate receptor 2.8-like [Malus domestica]	[more]
gi\|147863426\|emb\|CAN79781.1\|	4.5e-18	48.86	hypothetical protein VITISV_041886 [Vitis vinifera]	[more]
gi\|694430965\|ref\|XP_009342933.1\|	7.7e-18	51.14	PREDICTED: uncharacterized protein LOC103934897 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G21680	CSPI06G21680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G21680.1	CSPI06G21680.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G21680.1.cds1	CSPI06G21680.1.cds1	CDS