CSPI06G08840 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G08840
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Autophagy-related protein
Location	Chr6 : 7431909 .. 7435959 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTAGCACACCATGGAAAATAGAAAATAGAAAATAAAGTTGGTTATTTTTTCTCTCTATAAAATTGGTTATATAATAAAAGGAAAATGGAAAAGAAAATAGGTGGAAACTTTGAACATTAGCTGAGTCATCCCGTGATCATCATCATCATCATCCCATCTTATCTCATTTCCAATCAAAACACTCTACGTTTCCAATTCATCTCCCTCAAATCGACACACAATCTTTTGACAATTTCAATACTTTTACAAATCCCATTTCCGATCTTTTCTCCCTAATTTTCCCTTTCATTTTTGCTTTCCTCGCCTGAGAGTTCACAGCTGATCTCCTCTTTCCCCGCCGTCGACTCTCTGGTTTGTATTTCCTTACCCATGATCCTAATTTTTCTTTGATCTCAGTTGTTTTCACGTTTCTTTTCTTCTTATCCAACCGGCGATTAGCTAATTGACTAAATTCGTGGATTATTGCCTTGATCGATTACTTTTTGGAGATATTGTGTGTTCTTTTTCTTTGTTTTTATTTATGTTCTATGCTTGAGTTGCCAAATTAGTGGTCTGTCGTGTTGATTATTGTCTTAAAATTTATGATTTTTGTTTCGGTTATTGATAGGGATGGTAGATTTTGACCGGGTTTACTTTGATTGAGCTGAATCGTCTTTTATTGGTTTTGTGACGAATGTTATATCGATTACGACTGATTGTTGGTTCAATCACTTTTTCTCAGTTTTTTTGTGAGTAATGTCTACGAGCTCGTTCAAGCAAGAGCATGAGTTTGGTATATTCTTGAGCTTTCTATGGAATCCTGTTATTTTTATAATCTCTTTTTCAAATCAAAATCATATTTGTTTTGTTCATTTTTTTTGCAGAAAAGAGACATGCTGAGGCAGCCCGGATTAGAGAAAAATACCCAGACAGAATTCCGGTAAGATTTATGACTTTTCTTGTTTGTTATTCTGTCTTCAATTTTGGTTTTCTTCATTTTTGTGTACTGAATTTGGGATTGATTGACCTTAACTGCGTAATCTTTTAGTATGTATGATTGTATGCTTGAGTGTTTATGTGAATGTGTACTATGTCAAATGGGATTTTTCTCAACAGAACAAATAATTTCATGATTGCTATTAATGGCTTATTGATTCTCATTTCTCATCTATTCTTGGTATATTCCATTTATGAACAATATTAACTTGGCATCTCTTGATATCTTATCACAAAAGCTTAATATCTGTCTGCATTTGGAAAAAAGATCTTTGTAATACATAAATTTTGGTTGTAAAGTAGATATTGTGTCTTGGTAACTATGCCTGTCTCCACTTGTTGAGCAGGCATGTTTAGATGCTTTATAAATAACACCTTGTCACAGAAAATTTTCATTGATGGTGTCAGCTTTAAAAGATTTGCATTCCTATCTTTCACCTAGTGAATTATTATGTTTTTTTTTTCTTCTTGTTCACCAAGTTTGTTCAAATCTGAGAAAAGAGTTGACTCAGAAAATAGTGAAATGGGATCCAATTATGCTAGGTCCTCCTTTCCTTTCTCTAAATTCCTGTTTACTTTACTGTTATTATTACTACTATGATAAAACCAACCATTTGTTGAGAAACATGAAGGATTATAGAAAAGCTTTAAAAAACAGCCCAATATGGAAGGCAAACAACAACAGACCTGGCAAAAGGAAAAGAAAAGGGTCCTATCTAAAAGAATAAAAGCTGAAGGATAATTATAAGAGTCCCTAGTTTTAGAAGCTCAAAGAGAGGGATTTCAGGTGGGCATTGGCAAGGGCCCCATCTTTTTCCACGATCTCTCAAACCCTCTGAAAATCGATGTGGTGGTGCAGAGTGCATAGACCCAAAATCAATGTTGAATTGTGGATTTGGGACCATGAGAGAACACTTCTTTCTTGTAATTTCTATTATGTGTCGATGCCTATCAAAATGTTCATCATATAAACAGAACTACTACACTCTCTCATGCTGTTTATGGATCCATTATTTGATTTTCAAATCTTTCTTTTGTCATTATGGTTCATGTTTTCTTCTCATTATTATCATTCTCTTTTGTGTTGATTAGGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAGTAAGAAGAGTTTCTTTTAGCAATCTTACATTAGTTTCTTTCTTCTTCTCATTTTCTTGCAGTGCAATTGCAACAAGGTTTGGTTGTATCTTGGCCTACTTAGATTCCTTGATGTTCAAGAAGATAGGGTTTCAGTTTCTTAATGACCTGATTACGAATATTTTGCAGGTATCTAGTGCCTGCTGACCTGACTGTTGGTCAGTTTGTTTATGTTATCCGGAAAAGAATAAAATTGAGTGCAGAAAAGGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGTTAAAACACCCTTTTCTCTTCTTGGGTCAAGATCTGTGAGGAAAGGAAAATGATGATTGTTCTGTTTACAATGAGGGACGACCCTTAGCTATTCTTTCCTAAATATCTTTACCTAAAAGCATAGAAACCATTATACGGGAGACTCATGAGTCGTTCTGATTCATTTAACTTCGCACTTATCTCTCTACCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAGAAAAAGAACAAAAAATTAACTTCATTCTCAAGGTTGACGCCGTTGTATCCTTATACTAAATCTTATCTTCACAAGGGAATCGTACTGTCCAGTTGAGACATAATCAATCGTGACTTGGTTTCCGGACCACCTAAAAGGCCTCTAACTTATATATCATACATCTATTTCTTTGGTTAGACTTTGTTTGCACTTAACAATTAGAATAGTAATTTCTATACATTTTATTGAAAAAGTTGAGAGTCCCACGTTAGAAAAACCAAGGGGACTTATAATCTATATAAGATAGATGACTTACTCCTCTCATTGTCAATTTGTTTTGGGATGGAACCCCATACTATCAAATTTAACATAAAAGTGTCCAATTGATTGATAATCTAATAGATATTTTATGAACTTAGTGGTTTTCTGGTCATTTATTTATTTTTTAAAATTTGTACATAGTCAAGTAGTTGTTGTAGAGGATGTAATAAGCAGAAAAGACTTGAGGGAGAGAATACCACGGTCAAACAGTGAGCAGAGACCAACAATCCTACATAGAGATTGACAACAGTGCGCATGTAATGTTCTCAAAAGAAATGATAAACTATGTATAAGCTGGAAAATACTTGATCAATTGCTTATATTCTAAGAGCTGTAACGTGAGTTTCATACTGTCGTTTTCGATGTTAAAAAATGGAAAAGTAATGGAGATTTGGTTTCCTTAGGAAATGAGTTTCAAAAGTCTAGGCTCCTTCCTATGGATCTTTACTGTCATTGTTTTTTACTTATTTTTCGTTCAGAAAACACCGATAGAGTCAAGTGAGACAATAAAATCATTTAATTATTAACTTTATTTCTTCAGGATCACTGATGTCTGCCATCTATGATGAGAGGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGAGAAAACACATTTGGATGACGTCTACAATAGTACGCAGTTTCTTGCTCCCTCTCTACCTGTTCTTTATTTATTGTCTTCATCAGTCTCCGCAACCCATTGATTATCTACGTTGCTGTTTGTGCCAAATATGCCGGCTCGTGTCTGTAAATAAATTGTACAGTGGAAGACTATATATATATATATATGTATGTGAAAAACTTTAATGCCCAAATCATTTCAACTTGTAATCCCCTTGAATTGTATCTAATGAAGTCATAAATTGTAACCTTTAAAGCTTCGAGACCTTGTCGAGAATATGGGCGATGAAATTCAAATTCAAATCCAACATCTTGAGCTGATCAAACTCGATTGAAATTACGAATGGATTATCTCAGCTTTCTGAAGTTAATGTATATAGGATTATTATTTCTTTCACTATGCTGATTTCTCGTTA

mRNA sequence

ATGTCTACGAGCTCGTTCAAGCAAGAGCATGAGTTTGAAAAGAGACATGCTGAGGCAGCCCGGATTAGAGAAAAATACCCAGACAGAATTCCGGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAGTATCTAGTGCCTGCTGACCTGACTGTTGGTCAGTTTGTTTATGTTATCCGGAAAAGAATAAAATTGAGTGCAGAAAAGGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGATCACTGATGTCTGCCATCTATGATGAGAGGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGAGAAAACACATTTGGATGA

Coding sequence (CDS)

ATGTCTACGAGCTCGTTCAAGCAAGAGCATGAGTTTGAAAAGAGACATGCTGAGGCAGCCCGGATTAGAGAAAAATACCCAGACAGAATTCCGGTAATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAGTATCTAGTGCCTGCTGACCTGACTGTTGGTCAGTTTGTTTATGTTATCCGGAAAAGAATAAAATTGAGTGCAGAAAAGGCAATTTTCATATTCGTGGACAATGTGCTACCGCCAACAGGATCACTGATGTCTGCCATCTATGATGAGAGGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGAGAAAACACATTTGGATGA

Homology

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BLAST of CSPI06G08840 vs. Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-53
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+ EKR AEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-52
Identity = 100/117 (85.47%), Postives = 110/117 (94.02%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           MS  SF+Q+H+FEKR AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=1 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-51
Identity = 96/114 (84.21%), Postives = 109/114 (95.61%), Query Frame = 1


Query: 4   SSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVY 63
           S FK +++FEKR AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 64  VIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           VIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY+TYSGENTFG
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

[Close]

BLAST of CSPI06G08840 vs. Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-50
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFK EH  E+R AEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYV+RKRIKLSAEKAIFIFV N LPPT +LMSAIY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-50
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFK EH  E+R AEA RIREKYPDRIPVIVEKAERSDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYV+RKRIKLSAEKAIFIFV N LPPT +LMSAIY+E KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TrEMBL
Match: A0A0A0KFQ8_CUCSA (Autophagy-related protein OS=Cucumis sativus GN=Csa_6G109660 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.1e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TrEMBL
Match: B9GPC9_POPTR (Autophagy-related protein OS=Populus trichocarpa GN=POPTR_0002s14540g PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-54
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+FEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MTKSSFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MS IYDE KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDENKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TrEMBL
Match: A0A059C3X7_EUCGR (Autophagy-related protein OS=Eucalyptus grandis GN=EUGRSUZ_E01504 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-54
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ S FKQEH+FEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MNKSVFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIYDE+KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TrEMBL
Match: A0A0J8B961_BETVU (Autophagy-related protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g122840 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.0e-54
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+ EKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIY+E+KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TrEMBL
Match: U5D780_AMBTC (Autophagy-related protein OS=Amborella trichopoda GN=AMTR_s00044p00225880 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.0e-54
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+TSSFKQEH+ EKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MTTSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPT ++MS IYDE+KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTAAIMSTIYDEKKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TAIR10
Match: AT4G16520.1 (AT4G16520.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 210.3 bits (534), Expect = 6.4e-55
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+ EKR AEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPP G+LMS++Y+E+KD+DGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TAIR10
Match: AT3G60640.1 (AT3G60640.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 204.9 bits (520), Expect = 2.7e-53
Identity = 100/117 (85.47%), Postives = 110/117 (94.02%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           MS  SF+Q+H+FEKR AEA RIREKY DR+PVIVEK+E+SDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSNVSFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRI+LSAEKAIFIFVDNVLPPTG++MS IYDE K+EDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. TAIR10
Match: AT2G45170.1 (AT2G45170.1 AUTOPHAGY 8E)

HSP 1 Score: 201.1 bits (510), Expect = 3.9e-52
Identity = 96/114 (84.21%), Postives = 109/114 (95.61%), Query Frame = 1


Query: 4   SSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVY 63
           S FK +++FEKR AEA RIREKYPDRIPVIVEKAE+S++PNIDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 64  VIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           VIRKRIKLSAEKAIFIFVDNVLPPTG LMS++Y+++KDEDGFLY+TYSGENTFG
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

[Close]

BLAST of CSPI06G08840 vs. TAIR10
Match: AT1G62040.2 (AT1G62040.2 Ubiquitin-like superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-51
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFK EH  E+R  E++RIREKYPDRIPVIVE+AERSD+PNIDKKKYLVPADLTVGQ
Sbjct: 15  MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 74

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYV+RKRIKLSAEKAIF+FV N LPPT ++MSAIYDE KDEDGFLY+TYSGENTFG
Sbjct: 75  FVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 131

[Close]

BLAST of CSPI06G08840 vs. TAIR10
Match: AT4G21980.2 (AT4G21980.2 Ubiquitin-like superfamily protein)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-47
Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFK  +  E R +E++RIREKYPDRIPVIVEKA +SD+P+IDKKKYLVPADLTVGQ
Sbjct: 16  MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 75

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYV+RKRIKL AEKAIF+FV N LPPT +LMSAIY+E KDEDGFLY+TYSGENTFG
Sbjct: 76  FVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 132

[Close]

BLAST of CSPI06G08840 vs. NCBI nr
Match: gi|778712265|ref|XP_011656871.1| (PREDICTED: autophagy-related protein 8f [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. NCBI nr
Match: gi|659116560|ref|XP_008458134.1| (PREDICTED: autophagy-related protein 8f [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-57
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           MSTSSFKQEH+FEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MSTSSFKQEHDFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. NCBI nr
Match: gi|702341137|ref|XP_010056366.1| (PREDICTED: autophagy-related protein 8f-like [Eucalyptus grandis])

HSP 1 Score: 219.2 bits (557), Expect = 3.9e-54
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ S FKQEH+FEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MNKSVFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIYDE+KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. NCBI nr
Match: gi|224067661|ref|XP_002302521.1| (hypothetical protein POPTR_0002s14540g [Populus trichocarpa])

HSP 1 Score: 219.2 bits (557), Expect = 3.9e-54
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+FEKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MTKSSFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MS IYDE KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDENKDEDGFLYVTYSGENTFG 117

[Close]

BLAST of CSPI06G08840 vs. NCBI nr
Match: gi|902231902|gb|KNA22438.1| (hypothetical protein SOVF_034070 [Spinacia oleracea])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 1   MSTSSFKQEHEFEKRHAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60
           M+ SSFKQEH+ EKR AEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGSLMSAIYDERKDEDGFLYVTYSGENTFG 118
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTG++MSAIY+E+KDEDGFLYVTYSGENTFG
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117

The following BLAST results are available for this feature:

BLAST of CSPI06G08840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATG8F_ARATH	1.1e-53	88.03	Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=1 SV=1	[more]
ATG8G_ARATH	4.8e-52	85.47	Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1	[more]
ATG8E_ARATH	6.9e-51	84.21	Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=1 SV=2	[more]
ATG8C_ORYSJ	1.2e-50	85.47	Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1	[more]
ATG8C_ORYSI	1.2e-50	85.47	Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2	[more]

BLAST of CSPI06G08840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ8_CUCSA	3.1e-58	100.00	Autophagy-related protein OS=Cucumis sativus GN=Csa_6G109660 PE=3 SV=1	[more]
B9GPC9_POPTR	2.7e-54	93.16	Autophagy-related protein OS=Populus trichocarpa GN=POPTR_0002s14540g PE=3 SV=1	[more]
A0A059C3X7_EUCGR	2.7e-54	93.16	Autophagy-related protein OS=Eucalyptus grandis GN=EUGRSUZ_E01504 PE=3 SV=1	[more]
A0A0J8B961_BETVU	8.0e-54	92.31	Autophagy-related protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g122840 PE=3...	[more]
U5D780_AMBTC	8.0e-54	92.31	Autophagy-related protein OS=Amborella trichopoda GN=AMTR_s00044p00225880 PE=3 S...	[more]

BLAST of CSPI06G08840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16520.1	6.4e-55	88.03	Ubiquitin-like superfamily protein	[more]
AT3G60640.1	2.7e-53	85.47	Ubiquitin-like superfamily protein	[more]
AT2G45170.1	3.9e-52	84.21	AUTOPHAGY 8E	[more]
AT1G62040.2	1.1e-51	82.05	Ubiquitin-like superfamily protein	[more]
AT4G21980.2	1.7e-47	77.78	Ubiquitin-like superfamily protein	[more]

BLAST of CSPI06G08840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712265\|ref\|XP_011656871.1\|	4.5e-58	100.00	PREDICTED: autophagy-related protein 8f [Cucumis sativus]	[more]
gi\|659116560\|ref\|XP_008458134.1\|	1.0e-57	99.15	PREDICTED: autophagy-related protein 8f [Cucumis melo]	[more]
gi\|702341137\|ref\|XP_010056366.1\|	3.9e-54	93.16	PREDICTED: autophagy-related protein 8f-like [Eucalyptus grandis]	[more]
gi\|224067661\|ref\|XP_002302521.1\|	3.9e-54	93.16	hypothetical protein POPTR_0002s14540g [Populus trichocarpa]	[more]
gi\|902231902\|gb\|KNA22438.1\|	1.1e-53	92.31	hypothetical protein SOVF_034070 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004241	Atg8-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G08840.1	CSPI06G08840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 1..117 score: 4.0
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 14..117 score: 9.6
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 3..117 score: 4.0
None	No IPR available	PANTHER	PTHR10969:SF31	AUTOPHAGY-RELATED PROTEIN 8G	coord: 1..117 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G08840	Cla006662	Watermelon (97103) v1	cpiwmB563
CSPI06G08840	Csa6G109660	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G08840	MELO3C021148	Melon (DHL92) v3.5.1	cpimeB436
CSPI06G08840	ClCG06G003100	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G08840	Lsi09G016260	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G08840	MELO3C021148.2	Melon (DHL92) v3.6.1	cpimedB435
CSPI06G08840	CsaV3_6G009210	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G08840	Cla97C06G112490	Watermelon (97103) v2	cpiwmbB495
CSPI06G08840	Bhi12G001902	Wax gourd	cpiwgoB549
CSPI06G08840	Cucsa.120580	Cucumber (Gy14) v1	cgycpiB156
CSPI06G08840	CmoCh17G004510	Cucurbita moschata (Rifu)	cmocpiB372
CSPI06G08840	CsGy6G008980	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G08840	Carg26706	Silver-seed gourd	carcpiB0593

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G08840	Cucurbita moschata (Rifu)	cmocpiB898
CSPI06G08840	Cucurbita pepo (Zucchini)	cpecpiB154
CSPI06G08840	Cucurbita pepo (Zucchini)	cpecpiB329
CSPI06G08840	Silver-seed gourd	carcpiB0637
CSPI06G08840	Cucurbita maxima (Rimu)	cmacpiB383
CSPI06G08840	Cucurbita maxima (Rimu)	cmacpiB918