CSPI04G08610 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08610
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Polyprotein, putative
Location	Chr4 : 6372713 .. 6373129 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

mRNA sequence

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

Coding sequence (CDS)

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

Homology

[Close]

BLAST of CSPI04G08610 vs. TrEMBL
Match: M5X570_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 69/127 (54.33%), Postives = 91/127 (71.65%), Query Frame = 1


Query: 13  DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
           D N+P  FEG +FKRW+Q M F+ T KK+A+ CTS  P     N T E       W+E +
Sbjct: 11  DPNKPSKFEGLHFKRWRQKMLFYPTTKKLASVCTSDKP-YASDNPTPEQTWALQTWTEND 70

Query: 73  FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDR 132
           F+CKN ILNGL+D+LYDYYS+  TAK++W  LQK Y+TE+ G+KK+ VSRYL++QM D++
Sbjct: 71  FLCKNYILNGLSDDLYDYYSSYDTAKDLWDALQKNYNTEEAGAKKFAVSRYLKFQMIDEK 130

Query: 133 SVEAQWH 139
           SVEAQ H
Sbjct: 131 SVEAQSH 136

[Close]

BLAST of CSPI04G08610 vs. TrEMBL
Match: M5WR01_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 13  DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
           DLN+P  FEG +FKRW+Q M F+LT KK+A  CTS  P   + N T E       W+E +
Sbjct: 11  DLNKPSKFEGLHFKRWRQKMLFYLTTKKLAFVCTSVKPYAFD-NPTPEQTWALQTWTEND 70

Query: 73  FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVV 120
           F+CKN ILNGL+++LYDYYS+  TAKE+W  LQKKYDT++ G+KK+ V
Sbjct: 71  FLCKNYILNGLSNDLYDYYSSYDTAKELWDALQKKYDTKESGAKKFAV 117

[Close]

BLAST of CSPI04G08610 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
             ++F+C+N ++NGLTD LY+ YS   TAKE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-23
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
             ++F+C+N ++NGL D LY+ YS   TAKE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610 vs. TrEMBL
Match: A5B695_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005499 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISXSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
              +F+C+N ++NGL D  Y+ YS   T KE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHXDFLCRNYVMNGLADSXYNVYSDKKTTKELWESLDRKYKTEDVGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610 vs. TAIR10
Match: AT4G00980.1 (AT4G00980.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 34/126 (26.98%), Postives = 59/126 (46.83%), Query Frame = 1


Query: 20  FEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVK-------THTAWSETN 79
           F+G ++  W   M  FL   K+    +   P I  S   E + +       T   W   +
Sbjct: 198 FDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRDD 257

Query: 80  FMCKNLILNGLTDELYDYYST-MSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDD 137
           ++C   ++N L+D LY  YS     AKE+W  L+  Y  ++  SK+  V +Y+ ++M ++
Sbjct: 258 YLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEE 317

[Close]

BLAST of CSPI04G08610 vs. NCBI nr
Match: gi|659123591|ref|XP_008461736.1| (PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 1   MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEE 60
           MAG FQ  L S DLN PF FEGA+FKRWKQ M FFLTLKKVAT CT++  K+ E + TEE
Sbjct: 1   MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEE 60

Query: 61  HVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVV 120
            +K    W+ET+F+ KNLILNGLTDELYDYYSTM+TAKEVW   QKKYDTE+ GSKKY V
Sbjct: 61  QLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKKYDTEETGSKKYAV 120

Query: 121 SRYLRYQMTDDRSVEAQWH 139
           + YLRYQ+T+DRSVEAQ H
Sbjct: 121 NPYLRYQITNDRSVEAQSH 139

[Close]

BLAST of CSPI04G08610 vs. NCBI nr
Match: gi|955353733|ref|XP_014620223.1| (PREDICTED: uncharacterized protein LOC106795316 [Glycine max])

HSP 1 Score: 151.8 bits (382), Expect = 9.1e-34
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FKRW+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKRWQQKMMFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYDTE+ G+KKYVVSRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDTEEAGTKKYVVSRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+SVE+Q H
Sbjct: 130 QMTDDKSVESQSH 142

[Close]

BLAST of CSPI04G08610 vs. NCBI nr
Match: gi|955382863|ref|XP_014625903.1| (PREDICTED: uncharacterized protein LOC106796829 [Glycine max])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FKRW+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKRWQQKMTFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYD E+ G+KKYVVSRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDIEEAGTKKYVVSRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+SVE+Q H
Sbjct: 130 QMTDDKSVESQSH 142

[Close]

BLAST of CSPI04G08610 vs. NCBI nr
Match: gi|694324346|ref|XP_009353199.1| (PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri])

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 72/127 (56.69%), Postives = 90/127 (70.87%), Query Frame = 1


Query: 13   DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
            DLN+P  F+G  FKRW+Q M FFL+ KK+A+ CT+  P + E   T  H K    W E +
Sbjct: 1259 DLNKPSKFKGLYFKRWRQKMLFFLSTKKLASFCTTVKPTLPE-EPTMAHTKASQTWIEND 1318

Query: 73   FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDR 132
            F+ KN ILNG  D+LYDYYS   TAK++W  LQKKYD E+ G+KK+VVSRYL+YQM DD+
Sbjct: 1319 FLAKNYILNGFPDDLYDYYSDYGTAKDLWEALQKKYDNEEAGAKKFVVSRYLKYQMVDDK 1378

Query: 133  SVEAQWH 139
            SVEAQ H
Sbjct: 1379 SVEAQSH 1384

[Close]

BLAST of CSPI04G08610 vs. NCBI nr
Match: gi|955304629|ref|XP_014634108.1| (PREDICTED: uncharacterized protein LOC106799690 [Glycine max])

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-32
Identity = 71/133 (53.38%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FK W+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKHWQQKMMFYLTMRKVAYVLNTGIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYDTE+ G+KKY  SRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDTEETGTKKYAASRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+S+E+Q H
Sbjct: 130 QMTDDKSIESQSH 142

The following BLAST results are available for this feature:

BLAST of CSPI04G08610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08610 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X570_PRUPE	1.0e-31	54.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1	[more]
M5WR01_PRUPE	2.4e-25	54.63	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 S...	[more]
A5AMN2_VITVI	1.7e-23	43.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A5AEN5_VITVI	6.6e-23	42.64	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1	[more]
A5B695_VITVI	1.2e-21	41.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005499 PE=4 SV=1	[more]

BLAST of CSPI04G08610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00980.1	7.0e-08	26.98	zinc knuckle (CCHC-type) family protein	[more]

BLAST of CSPI04G08610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123591\|ref\|XP_008461736.1\|	1.6e-46	69.78	PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo]	[more]
gi\|955353733\|ref\|XP_014620223.1\|	9.1e-34	56.39	PREDICTED: uncharacterized protein LOC106795316 [Glycine max]	[more]
gi\|955382863\|ref\|XP_014625903.1\|	4.5e-33	55.64	PREDICTED: uncharacterized protein LOC106796829 [Glycine max]	[more]
gi\|694324346\|ref\|XP_009353199.1\|	2.2e-32	56.69	PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri]	[more]
gi\|955304629\|ref\|XP_014634108.1\|	3.8e-32	53.38	PREDICTED: uncharacterized protein LOC106799690 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08610.1	CSPI04G08610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 67..135 score: 8.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G08610	Melon (DHL92) v3.6.1	cpimedB292
CSPI04G08610	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G08610	Silver-seed gourd	carcpiB0735
CSPI04G08610	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G08610	Watermelon (97103) v2	cpiwmbB283
CSPI04G08610	Wax gourd	cpiwgoB362
CSPI04G08610	Cucumber (Gy14) v1	cgycpiB411
CSPI04G08610	Watermelon (97103) v1	cpiwmB323
CSPI04G08610	Cucurbita maxima (Rimu)	cmacpiB475
CSPI04G08610	Cucurbita moschata (Rifu)	cmocpiB464
CSPI04G08610	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G08610	Melon (DHL92) v3.5.1	cpimeB298
CSPI04G08610	Watermelon (Charleston Gray)	cpiwcgB285
CSPI04G08610	Watermelon (97103) v1	cpiwmB295
CSPI04G08610	Bottle gourd (USVL1VR-Ls)	cpilsiB281
CSPI04G08610	Bottle gourd (USVL1VR-Ls)	cpilsiB308