CSPI04G08610.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08610.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Polyprotein, putative
Location	Chr4 : 6372713 .. 6373129 (-)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

mRNA sequence

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

Coding sequence (CDS)

ATGGCCGGATCATTCCAAGGTGATTTGAGTTCCTCTGACCTCAACCGTCCTTTTCATTTTGAAGGAGCAAATTTTAAGAGGTGGAAACAAAATATGTTTTTTCTTACTTTGAAGAAGGTGGCTACCGCATGTACCTCTAAAGGACCAAAAATCCTAGAGTCCAATCGAACTGAGGAGCATGTCAAAACTCATACCGCGTGGTCAGAAACCAATTTTATGTGTAAGAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCTACTGCGAAAGAAGTTTGGGGTGTGTTACAAAAGAAGTATGACACTGAGAAAGATGGATCTAAGAAGTATGTGGTAAGCCGATACTTGCGTTATCAAATGACTGATGACAGATCAGTGGAGGCTCAATGGCATTAG

Homology

[Close]

BLAST of CSPI04G08610.1 vs. TrEMBL
Match: M5X570_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 69/127 (54.33%), Postives = 91/127 (71.65%), Query Frame = 1


Query: 13  DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
           D N+P  FEG +FKRW+Q M F+ T KK+A+ CTS  P     N T E       W+E +
Sbjct: 11  DPNKPSKFEGLHFKRWRQKMLFYPTTKKLASVCTSDKP-YASDNPTPEQTWALQTWTEND 70

Query: 73  FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDR 132
           F+CKN ILNGL+D+LYDYYS+  TAK++W  LQK Y+TE+ G+KK+ VSRYL++QM D++
Sbjct: 71  FLCKNYILNGLSDDLYDYYSSYDTAKDLWDALQKNYNTEEAGAKKFAVSRYLKFQMIDEK 130

Query: 133 SVEAQWH 139
           SVEAQ H
Sbjct: 131 SVEAQSH 136

[Close]

BLAST of CSPI04G08610.1 vs. TrEMBL
Match: M5WR01_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 13  DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
           DLN+P  FEG +FKRW+Q M F+LT KK+A  CTS  P   + N T E       W+E +
Sbjct: 11  DLNKPSKFEGLHFKRWRQKMLFYLTTKKLAFVCTSVKPYAFD-NPTPEQTWALQTWTEND 70

Query: 73  FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVV 120
           F+CKN ILNGL+++LYDYYS+  TAKE+W  LQKKYDT++ G+KK+ V
Sbjct: 71  FLCKNYILNGLSNDLYDYYSSYDTAKELWDALQKKYDTKESGAKKFAV 117

[Close]

BLAST of CSPI04G08610.1 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
             ++F+C+N ++NGLTD LY+ YS   TAKE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610.1 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-23
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
             ++F+C+N ++NGL D LY+ YS   TAKE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610.1 vs. TrEMBL
Match: A5B695_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005499 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 9   LSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAW 68
           +S S   +P  F G NFKRW+Q M F+LT   +A   T   PK+ E     + +    AW
Sbjct: 33  ISXSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 69  SETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQM 128
              +F+C+N ++NGL D  Y+ YS   T KE+W  L +KY TE  G+KK+VV R+L Y+M
Sbjct: 93  KHXDFLCRNYVMNGLADSXYNVYSDKKTTKELWESLDRKYKTEDVGAKKFVVGRFLDYKM 152

Query: 129 TDDRSVEAQ 137
            D ++V +Q
Sbjct: 153 VDSKTVVSQ 161

[Close]

BLAST of CSPI04G08610.1 vs. TAIR10
Match: AT4G00980.1 (AT4G00980.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 34/126 (26.98%), Postives = 59/126 (46.83%), Query Frame = 1


Query: 20  FEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVK-------THTAWSETN 79
           F+G ++  W   M  FL   K+    +   P I  S   E + +       T   W   +
Sbjct: 198 FDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRDD 257

Query: 80  FMCKNLILNGLTDELYDYYST-MSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDD 137
           ++C   ++N L+D LY  YS     AKE+W  L+  Y  ++  SK+  V +Y+ ++M ++
Sbjct: 258 YLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEE 317

[Close]

BLAST of CSPI04G08610.1 vs. NCBI nr
Match: gi|659123591|ref|XP_008461736.1| (PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 1.6e-46
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 1   MAGSFQGDLSSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEE 60
           MAG FQ  L S DLN PF FEGA+FKRWKQ M FFLTLKKVAT CT++  K+ E + TEE
Sbjct: 1   MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEE 60

Query: 61  HVKTHTAWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVV 120
            +K    W+ET+F+ KNLILNGLTDELYDYYSTM+TAKEVW   QKKYDTE+ GSKKY V
Sbjct: 61  QLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKKYDTEETGSKKYAV 120

Query: 121 SRYLRYQMTDDRSVEAQWH 139
           + YLRYQ+T+DRSVEAQ H
Sbjct: 121 NPYLRYQITNDRSVEAQSH 139

[Close]

BLAST of CSPI04G08610.1 vs. NCBI nr
Match: gi|955353733|ref|XP_014620223.1| (PREDICTED: uncharacterized protein LOC106795316 [Glycine max])

HSP 1 Score: 151.8 bits (382), Expect = 9.1e-34
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FKRW+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKRWQQKMMFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYDTE+ G+KKYVVSRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDTEEAGTKKYVVSRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+SVE+Q H
Sbjct: 130 QMTDDKSVESQSH 142

[Close]

BLAST of CSPI04G08610.1 vs. NCBI nr
Match: gi|955382863|ref|XP_014625903.1| (PREDICTED: uncharacterized protein LOC106796829 [Glycine max])

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-33
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FKRW+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKRWQQKMTFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYD E+ G+KKYVVSRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDIEEAGTKKYVVSRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+SVE+Q H
Sbjct: 130 QMTDDKSVESQSH 142

[Close]

BLAST of CSPI04G08610.1 vs. NCBI nr
Match: gi|694324346|ref|XP_009353199.1| (PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri])

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 72/127 (56.69%), Postives = 90/127 (70.87%), Query Frame = 1


Query: 13   DLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTHTAWSETN 72
            DLN+P  F+G  FKRW+Q M FFL+ KK+A+ CT+  P + E   T  H K    W E +
Sbjct: 1259 DLNKPSKFKGLYFKRWRQKMLFFLSTKKLASFCTTVKPTLPE-EPTMAHTKASQTWIEND 1318

Query: 73   FMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRYQMTDDR 132
            F+ KN ILNG  D+LYDYYS   TAK++W  LQKKYD E+ G+KK+VVSRYL+YQM DD+
Sbjct: 1319 FLAKNYILNGFPDDLYDYYSDYGTAKDLWEALQKKYDNEEAGAKKFVVSRYLKYQMVDDK 1378

Query: 133  SVEAQWH 139
            SVEAQ H
Sbjct: 1379 SVEAQSH 1384

[Close]

BLAST of CSPI04G08610.1 vs. NCBI nr
Match: gi|955304629|ref|XP_014634108.1| (PREDICTED: uncharacterized protein LOC106799690 [Glycine max])

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-32
Identity = 71/133 (53.38%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 10  SSSDLNRPFHFEGANFKRWKQNM-FFLTLKKVATACTSKGPKILESNRTEEHVKTH---T 69
           +S+DLN+PF FEG +FK W+Q M F+LT++KVA    +  P +LE    E   K      
Sbjct: 10  NSNDLNKPFRFEGYHFKHWQQKMMFYLTMRKVAYVLNTGIPVVLEDAEKEVKDKMTMELA 69

Query: 70  AWSETNFMCKNLILNGLTDELYDYYSTMSTAKEVWGVLQKKYDTEKDGSKKYVVSRYLRY 129
            W+E +++CKN ILNGL D+LYDYYS   +AK VW  L+KKYDTE+ G+KKY  SRYL+Y
Sbjct: 70  LWNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDTEETGTKKYAASRYLKY 129

Query: 130 QMTDDRSVEAQWH 139
           QMTDD+S+E+Q H
Sbjct: 130 QMTDDKSIESQSH 142

The following BLAST results are available for this feature:

BLAST of CSPI04G08610.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08610.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X570_PRUPE	1.0e-31	54.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1	[more]
M5WR01_PRUPE	2.4e-25	54.63	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 S...	[more]
A5AMN2_VITVI	1.7e-23	43.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A5AEN5_VITVI	6.6e-23	42.64	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1	[more]
A5B695_VITVI	1.2e-21	41.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005499 PE=4 SV=1	[more]

BLAST of CSPI04G08610.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00980.1	7.0e-08	26.98	zinc knuckle (CCHC-type) family protein	[more]

BLAST of CSPI04G08610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123591\|ref\|XP_008461736.1\|	1.6e-46	69.78	PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo]	[more]
gi\|955353733\|ref\|XP_014620223.1\|	9.1e-34	56.39	PREDICTED: uncharacterized protein LOC106795316 [Glycine max]	[more]
gi\|955382863\|ref\|XP_014625903.1\|	4.5e-33	55.64	PREDICTED: uncharacterized protein LOC106796829 [Glycine max]	[more]
gi\|694324346\|ref\|XP_009353199.1\|	2.2e-32	56.69	PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri]	[more]
gi\|955304629\|ref\|XP_014634108.1\|	3.8e-32	53.38	PREDICTED: uncharacterized protein LOC106799690 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G08610	CSPI04G08610	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G08610.1	CSPI04G08610.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G08610.1.cds1	CSPI04G08610.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 67..135 score: 8.