CSPI02G22520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G22520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19618794 .. 19619065 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAAATCAACAGTTGGATGGCCAAGAGAACCAACCAATTAAGGGAAGGTGCATTATCCGCATAAGATTTTAACATATACCACTTCAGAGT

mRNA sequence

ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAA

Coding sequence (CDS)

ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAA
Homology
[Close]
BLAST of CSPI02G22520 vs. TrEMBL
Match: A0A0A0LPU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G376810 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60
          MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK
Sbjct: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of CSPI02G22520 vs. NCBI nr
Match: gi|700207723|gb|KGN62842.1| (hypothetical protein Csa_2G376810 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60
          MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK
Sbjct: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:
BLAST of CSPI02G22520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU8_CUCSA1.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G376810 PE=4 SV=1[more]
BLAST of CSPI02G22520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G22520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207723|gb|KGN62842.1|2.2e-27100.00hypothetical protein Csa_2G376810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G22520.1CSPI02G22520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G22520Csa2G376810Cucumber (Chinese Long) v2cpicuB065
CSPI02G22520CsaV3_2G031160Cucumber (Chinese Long) v3cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G22520Wild cucumber (PI 183967)cpicpiB066
CSPI02G22520Cucumber (Gy14) v1cgycpiB239
CSPI02G22520Cucumber (Gy14) v1cgycpiB469
CSPI02G22520Cucurbita maxima (Rimu)cmacpiB013
CSPI02G22520Cucurbita maxima (Rimu)cmacpiB165
CSPI02G22520Cucurbita maxima (Rimu)cmacpiB179
CSPI02G22520Cucurbita maxima (Rimu)cmacpiB445
CSPI02G22520Cucurbita maxima (Rimu)cmacpiB794
CSPI02G22520Cucurbita moschata (Rifu)cmocpiB003
CSPI02G22520Cucurbita moschata (Rifu)cmocpiB150
CSPI02G22520Cucurbita moschata (Rifu)cmocpiB164
CSPI02G22520Cucurbita moschata (Rifu)cmocpiB434
CSPI02G22520Cucurbita moschata (Rifu)cmocpiB783
CSPI02G22520Cucumber (Chinese Long) v2cpicuB075
CSPI02G22520Melon (DHL92) v3.5.1cpimeB118
CSPI02G22520Melon (DHL92) v3.5.1cpimeB124
CSPI02G22520Watermelon (Charleston Gray)cpiwcgB168
CSPI02G22520Watermelon (97103) v1cpiwmB112
CSPI02G22520Cucurbita pepo (Zucchini)cpecpiB093
CSPI02G22520Cucurbita pepo (Zucchini)cpecpiB540
CSPI02G22520Cucurbita pepo (Zucchini)cpecpiB775
CSPI02G22520Cucurbita pepo (Zucchini)cpecpiB811
CSPI02G22520Cucurbita pepo (Zucchini)cpecpiB826
CSPI02G22520Bottle gourd (USVL1VR-Ls)cpilsiB120
CSPI02G22520Bottle gourd (USVL1VR-Ls)cpilsiB139
CSPI02G22520Melon (DHL92) v3.6.1cpimedB119
CSPI02G22520Melon (DHL92) v3.6.1cpimedB114
CSPI02G22520Cucumber (Gy14) v2cgybcpiB057
CSPI02G22520Cucumber (Gy14) v2cgybcpiB105
CSPI02G22520Silver-seed gourdcarcpiB0063
CSPI02G22520Silver-seed gourdcarcpiB0587
CSPI02G22520Silver-seed gourdcarcpiB0664
CSPI02G22520Silver-seed gourdcarcpiB1010
CSPI02G22520Silver-seed gourdcarcpiB1014
CSPI02G22520Cucumber (Chinese Long) v3cpicucB095
CSPI02G22520Watermelon (97103) v2cpiwmbB162
CSPI02G22520Wax gourdcpiwgoB160
CSPI02G22520Wax gourdcpiwgoB202