CSPI02G22520.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G22520.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19618794 .. 19619065 (+)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAAATCAACAGTTGGATGGCCAAGAGAACCAACCAATTAAGGGAAGGTGCATTATCCGCATAAGATTTTAACATATACCACTTCAGAGT

mRNA sequence

ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAA

Coding sequence (CDS)

ATGTCCCAGATAGCATTCGGTGGTGCAGCTGATAGAACTAACGTATTTAACTTGATTTACTGGGTTGATTCAATGAGCTGTGACAAGTATTTAAGCAGTGCCCTGTGGCAGGAGAAGACTGGCATGTCATGCAAAGCACGACAAGTTAAAACGGTTAGGCAGCCTTCACCACCGCCAAAACGCTAA
Homology
[Close]
BLAST of CSPI02G22520.1 vs. TrEMBL
Match: A0A0A0LPU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G376810 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60
          MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK
Sbjct: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of CSPI02G22520.1 vs. NCBI nr
Match: gi|700207723|gb|KGN62842.1| (hypothetical protein Csa_2G376810 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60
          MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK
Sbjct: 1  MSQIAFGGAADRTNVFNLIYWVDSMSCDKYLSSALWQEKTGMSCKARQVKTVRQPSPPPK 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:
BLAST of CSPI02G22520.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22520.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU8_CUCSA1.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G376810 PE=4 SV=1[more]
BLAST of CSPI02G22520.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G22520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207723|gb|KGN62842.1|2.2e-27100.00hypothetical protein Csa_2G376810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G22520CSPI02G22520gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G22520.1CSPI02G22520.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G22520.1.cds1CSPI02G22520.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G22520.1.utr3p1CSPI02G22520.1.utr3p1three_prime_UTR