CSPI02G07370 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G07370
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 6310651 .. 6311071 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTGTAGGCTTTCAAAGAATTTATCACAAATGAAGTGAAATAGTGGGAGATGGGTGTTATTGAGTTTAACCTATCTTCAAATATTTGTCAGATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAAGTACTTTATAACGTGCTTTGTTTAATTGAAGTCTATGACTTTCTAAATGTCCTAGGTTGTGTAATTTGAGTGCATACATGCTAGCCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG

mRNA sequence

ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAACCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG

Coding sequence (CDS)

ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAACCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG
Homology
[Close]
BLAST of CSPI02G07370 vs. TrEMBL
Match: A0A0A0LJL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075380 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 1 

Query: 1  MHLRVTNQVDGMGWIIRGVAGSPYVGIKSLNLPLLPVIVEFDYSETIQALLNLVKLTKLD 60
          MHL VTNQV   GWIIRGVAGSPYVGIKSLNL LLPVIVEF+YSETIQALLNLVKLTKLD
Sbjct: 1  MHLGVTNQV---GWIIRGVAGSPYVGIKSLNLSLLPVIVEFNYSETIQALLNLVKLTKLD 60

Query: 61 SGSCLEFFLSFASSSDISKNAV 83
          SGSCLEFFLSFASSSDISKNAV
Sbjct: 61 SGSCLEFFLSFASSSDISKNAV 79

[Close]
BLAST of CSPI02G07370 vs. NCBI nr
Match: gi|700206160|gb|KGN61279.1| (hypothetical protein Csa_2G075380 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 1 

Query: 1  MHLRVTNQVDGMGWIIRGVAGSPYVGIKSLNLPLLPVIVEFDYSETIQALLNLVKLTKLD 60
          MHL VTNQV   GWIIRGVAGSPYVGIKSLNL LLPVIVEF+YSETIQALLNLVKLTKLD
Sbjct: 1  MHLGVTNQV---GWIIRGVAGSPYVGIKSLNLSLLPVIVEFNYSETIQALLNLVKLTKLD 60

Query: 61 SGSCLEFFLSFASSSDISKNAV 83
          SGSCLEFFLSFASSSDISKNAV
Sbjct: 61 SGSCLEFFLSFASSSDISKNAV 79

The following BLAST results are available for this feature:
BLAST of CSPI02G07370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G07370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJL3_CUCSA1.3e-3192.68Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075380 PE=4 SV=1[more]
BLAST of CSPI02G07370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G07370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206160|gb|KGN61279.1|1.9e-3192.68hypothetical protein Csa_2G075380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G07370.1CSPI02G07370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G07370Csa2G075380Cucumber (Chinese Long) v2cpicuB065
CSPI02G07370CsaV3_2G009830Cucumber (Chinese Long) v3cpicucB080
CSPI02G07370CsGy2G007620Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G07370Cucurbita maxima (Rimu)cmacpiB166
CSPI02G07370Cucurbita maxima (Rimu)cmacpiB795
CSPI02G07370Cucurbita moschata (Rifu)cmocpiB151
CSPI02G07370Cucurbita moschata (Rifu)cmocpiB784
CSPI02G07370Melon (DHL92) v3.5.1cpimeB139
CSPI02G07370Watermelon (Charleston Gray)cpiwcgB110
CSPI02G07370Watermelon (97103) v1cpiwmB158
CSPI02G07370Cucurbita pepo (Zucchini)cpecpiB094
CSPI02G07370Cucurbita pepo (Zucchini)cpecpiB812
CSPI02G07370Bottle gourd (USVL1VR-Ls)cpilsiB096
CSPI02G07370Melon (DHL92) v3.6.1cpimedB132
CSPI02G07370Silver-seed gourdcarcpiB0191
CSPI02G07370Silver-seed gourdcarcpiB0752
CSPI02G07370Watermelon (97103) v2cpiwmbB111
CSPI02G07370Wax gourdcpiwgoB139
CSPI02G07370Cucumber (Gy14) v1cgycpiB284