CSPI02G07370.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G07370.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 6310651 .. 6311071 (-)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTGTAGGCTTTCAAAGAATTTATCACAAATGAAGTGAAATAGTGGGAGATGGGTGTTATTGAGTTTAACCTATCTTCAAATATTTGTCAGATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAAGTACTTTATAACGTGCTTTGTTTAATTGAAGTCTATGACTTTCTAAATGTCCTAGGTTGTGTAATTTGAGTGCATACATGCTAGCCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG

mRNA sequence

ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAACCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG

Coding sequence (CDS)

ATGCATCTTCGTGTGACAAATCAAGTTGATGGAATGGGTTGGATTATTCGTGGTGTTGCTGGATCGCCTTACGTTGGTATTAAGTCTTTGAATTTGCCTCTTCTCCCGGTTATCGTGGAATTCGACTATTCTGAAACTATTCAAGCTCTTTTGAATCTAGTAAAATTAACCAAATTGGACAGTGGCTCATGCTTGGAATTCTTTCTTAGTTTTGCATCTTCTTCCGACATTTCGAAAAATGCAGTTTAG
Homology
[Close]
BLAST of CSPI02G07370.1 vs. TrEMBL
Match: A0A0A0LJL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075380 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 1 

Query: 1  MHLRVTNQVDGMGWIIRGVAGSPYVGIKSLNLPLLPVIVEFDYSETIQALLNLVKLTKLD 60
          MHL VTNQV   GWIIRGVAGSPYVGIKSLNL LLPVIVEF+YSETIQALLNLVKLTKLD
Sbjct: 1  MHLGVTNQV---GWIIRGVAGSPYVGIKSLNLSLLPVIVEFNYSETIQALLNLVKLTKLD 60

Query: 61 SGSCLEFFLSFASSSDISKNAV 83
          SGSCLEFFLSFASSSDISKNAV
Sbjct: 61 SGSCLEFFLSFASSSDISKNAV 79

[Close]
BLAST of CSPI02G07370.1 vs. NCBI nr
Match: gi|700206160|gb|KGN61279.1| (hypothetical protein Csa_2G075380 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 1 

Query: 1  MHLRVTNQVDGMGWIIRGVAGSPYVGIKSLNLPLLPVIVEFDYSETIQALLNLVKLTKLD 60
          MHL VTNQV   GWIIRGVAGSPYVGIKSLNL LLPVIVEF+YSETIQALLNLVKLTKLD
Sbjct: 1  MHLGVTNQV---GWIIRGVAGSPYVGIKSLNLSLLPVIVEFNYSETIQALLNLVKLTKLD 60

Query: 61 SGSCLEFFLSFASSSDISKNAV 83
          SGSCLEFFLSFASSSDISKNAV
Sbjct: 61 SGSCLEFFLSFASSSDISKNAV 79

The following BLAST results are available for this feature:
BLAST of CSPI02G07370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G07370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJL3_CUCSA1.3e-3192.68Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075380 PE=4 SV=1[more]
BLAST of CSPI02G07370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G07370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206160|gb|KGN61279.1|1.9e-3192.68hypothetical protein Csa_2G075380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G07370CSPI02G07370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G07370.1CSPI02G07370.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G07370.1.cds3CSPI02G07370.1.cds3CDS
CSPI02G07370.1.cds2CSPI02G07370.1.cds2CDS
CSPI02G07370.1.cds1CSPI02G07370.1.cds1CDS