CSPI01G17070 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17070
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 12860243 .. 12860817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACAGCTTCCCCCCATATCTAATTCAAATCCTTCTCTTAACCATCAATTGAAATCATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGATCCAATTCTTATGCTAAAGGTTGTTTAATTGAGTTAATTGGATCGTAATGAATAAGAGAAAATTATCATTTTGTTACTTACATTAGTAGTATTTTATAAATTTAAGGAAGAGTGGATTTTGTTTCCATTTGAAATATGAGAACTAGTATTTGTTTTTCTTTTTACTTTTGTCAAAGGCCATTTAATTTTGATCTTTATTTTTCTT

mRNA sequence

ATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA
Homology
[Close]
BLAST of CSPI01G17070 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]
BLAST of CSPI01G17070 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1 

Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]
BLAST of CSPI01G17070 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-14
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

[Close]
BLAST of CSPI01G17070 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]
BLAST of CSPI01G17070 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1 

Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]
BLAST of CSPI01G17070 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

The following BLAST results are available for this feature:
BLAST of CSPI01G17070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G17070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTE1_CUCSA7.3e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
A0A0A0LTD6_CUCSA4.2e-1445.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA9.3e-1440.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
BLAST of CSPI01G17070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G17070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210099|gb|KGN65195.1|1.0e-50100.00hypothetical protein Csa_1G263980 [Cucumis sativus][more]
gi|700210094|gb|KGN65190.1|6.0e-1445.63hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|1.3e-1340.38hypothetical protein Csa_1G212820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17070.1CSPI01G17070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17070Cla018674Watermelon (97103) v1cpiwmB086
CSPI01G17070ClCG06G011840Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17070CsaV3_1G028320Cucumber (Chinese Long) v3cpicucB000
CSPI01G17070Bhi02G000741Wax gourdcpiwgoB099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17070Cucumber (Gy14) v1cgycpiB518
CSPI01G17070Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17070Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17070Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17070Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17070Cucumber (Chinese Long) v2cpicuB002
CSPI01G17070Melon (DHL92) v3.5.1cpimeB057
CSPI01G17070Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17070Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G17070Melon (DHL92) v3.6.1cpimedB051
CSPI01G17070Cucumber (Gy14) v2cgybcpiB002
CSPI01G17070Silver-seed gourdcarcpiB0138
CSPI01G17070Silver-seed gourdcarcpiB0608
CSPI01G17070Watermelon (97103) v2cpiwmbB068