CSPI01G17070.1 (mRNA) Wild cucumber (PI 183967)

NameCSPI01G17070.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 12860243 .. 12860817 (+)
Sequence length312
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACAGCTTCCCCCCATATCTAATTCAAATCCTTCTCTTAACCATCAATTGAAATCATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGATCCAATTCTTATGCTAAAGGTTGTTTAATTGAGTTAATTGGATCGTAATGAATAAGAGAAAATTATCATTTTGTTACTTACATTAGTAGTATTTTATAAATTTAAGGAAGAGTGGATTTTGTTTCCATTTGAAATATGAGAACTAGTATTTGTTTTTCTTTTTACTTTTGTCAAAGGCCATTTAATTTTGATCTTTATTTTTCTT

mRNA sequence

ATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTACCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGAACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA
BLAST of CSPI01G17070.1 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

BLAST of CSPI01G17070.1 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

BLAST of CSPI01G17070.1 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-14
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1

Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

BLAST of CSPI01G17070.1 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

BLAST of CSPI01G17070.1 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

BLAST of CSPI01G17070.1 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1

Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTE1_CUCSA7.3e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
A0A0A0LTD6_CUCSA4.2e-1445.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
A0A0A0LYQ3_CUCSA9.3e-1440.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700210099|gb|KGN65195.1|1.0e-50100.00hypothetical protein Csa_1G263980 [Cucumis sativus][more]
gi|700210094|gb|KGN65190.1|6.0e-1445.63hypothetical protein Csa_1G263450 [Cucumis sativus][more]
gi|700210000|gb|KGN65096.1|1.3e-1340.38hypothetical protein Csa_1G212820 [Cucumis sativus][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G17070CSPI01G17070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G17070.1CSPI01G17070.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G17070.1.utr5p1CSPI01G17070.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G17070.1.cds1CSPI01G17070.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G17070.1.utr3p1CSPI01G17070.1.utr3p1three_prime_UTR