CSPI01G03200 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2012571 .. 2012774 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

mRNA sequence

ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

Coding sequence (CDS)

ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA
Homology
[Close]
BLAST of CSPI01G03200 vs. TrEMBL
Match: A0A0A0LUQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015070 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60
          MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

Query: 61 DEESASV 68
          DEESASV
Sbjct: 61 DEESASV 67

[Close]
BLAST of CSPI01G03200 vs. NCBI nr
Match: gi|700208665|gb|KGN63761.1| (hypothetical protein Csa_1G015070 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60
          MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

Query: 61 DEESASV 68
          DEESASV
Sbjct: 61 DEESASV 67

The following BLAST results are available for this feature:
BLAST of CSPI01G03200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUQ9_CUCSA1.6e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015070 PE=4 SV=1[more]
BLAST of CSPI01G03200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208665|gb|KGN63761.1|2.3e-30100.00hypothetical protein Csa_1G015070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03200.1CSPI01G03200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03200Csa1G015070Cucumber (Chinese Long) v2cpicuB000
CSPI01G03200ClCG06G015380Watermelon (Charleston Gray)cpiwcgB074
CSPI01G03200CsaV3_1G003260Cucumber (Chinese Long) v3cpicucB001
CSPI01G03200CsGy1G003180Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03200Melon (DHL92) v3.6.1cpimedB019
CSPI01G03200Melon (DHL92) v3.6.1cpimedB040
CSPI01G03200Cucumber (Gy14) v2cgybcpiB004
CSPI01G03200Silver-seed gourdcarcpiB0497
CSPI01G03200Silver-seed gourdcarcpiB0500
CSPI01G03200Silver-seed gourdcarcpiB0550
CSPI01G03200Silver-seed gourdcarcpiB0626
CSPI01G03200Silver-seed gourdcarcpiB0628
CSPI01G03200Cucumber (Chinese Long) v3cpicucB003
CSPI01G03200Watermelon (97103) v2cpiwmbB054
CSPI01G03200Watermelon (97103) v2cpiwmbB056
CSPI01G03200Watermelon (97103) v2cpiwmbB071
CSPI01G03200Wax gourdcpiwgoB043
CSPI01G03200Wax gourdcpiwgoB082
CSPI01G03200Wild cucumber (PI 183967)cpicpiB000
CSPI01G03200Wild cucumber (PI 183967)cpicpiB004
CSPI01G03200Cucumber (Gy14) v1cgycpiB140
CSPI01G03200Cucumber (Gy14) v1cgycpiB310
CSPI01G03200Cucurbita maxima (Rimu)cmacpiB052
CSPI01G03200Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03200Cucurbita maxima (Rimu)cmacpiB101
CSPI01G03200Cucurbita maxima (Rimu)cmacpiB217
CSPI01G03200Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03200Cucurbita moschata (Rifu)cmocpiB043
CSPI01G03200Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03200Cucurbita moschata (Rifu)cmocpiB093
CSPI01G03200Cucurbita moschata (Rifu)cmocpiB203
CSPI01G03200Cucurbita moschata (Rifu)cmocpiB388
CSPI01G03200Cucumber (Chinese Long) v2cpicuB005
CSPI01G03200Cucumber (Chinese Long) v2cpicuB011
CSPI01G03200Melon (DHL92) v3.5.1cpimeB020
CSPI01G03200Melon (DHL92) v3.5.1cpimeB046
CSPI01G03200Watermelon (Charleston Gray)cpiwcgB058
CSPI01G03200Watermelon (Charleston Gray)cpiwcgB060
CSPI01G03200Watermelon (97103) v1cpiwmB065
CSPI01G03200Watermelon (97103) v1cpiwmB089
CSPI01G03200Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G03200Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03200Cucurbita pepo (Zucchini)cpecpiB364
CSPI01G03200Cucurbita pepo (Zucchini)cpecpiB642
CSPI01G03200Bottle gourd (USVL1VR-Ls)cpilsiB042
CSPI01G03200Bottle gourd (USVL1VR-Ls)cpilsiB062