CsaV3_1G003260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003260
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2026096 .. 2026299 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

mRNA sequence

ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

Coding sequence (CDS)

ATGGAATTAAAACGTGAAATCGATTGGGTTTCCGTGAAGCATAACCACACACAAACGACGGAAGCAAACGGGATGAAGGATTGGTGGACTGTTATGAGTAACGCCGTCAAGGCGCCGGAACGTCGTCAGTCAAACGGCGTCGAAAAACCAAACGGAAAACAACTACCTTCAATTCGGAAAGATGAAGAATCGGCGAGTGTATAA

Protein sequence

MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRKDEESASV
Homology
[Close]
BLAST of CsaV3_1G003260 vs. NCBI nr
Match: KGN63761.1 (hypothetical protein Csa_1G015070 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60
          MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

Query: 61 DEESASV 68
          DEESASV
Sbjct: 61 DEESASV 67

[Close]
BLAST of CsaV3_1G003260 vs. TrEMBL
Match: tr|A0A0A0LUQ9|A0A0A0LUQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015070 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60
          MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK
Sbjct: 1  MELKREIDWVSVKHNHTQTTEANGMKDWWTVMSNAVKAPERRQSNGVEKPNGKQLPSIRK 60

Query: 61 DEESASV 68
          DEESASV
Sbjct: 61 DEESASV 67

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63761.14.4e-30100.00hypothetical protein Csa_1G015070 [Cucumis sativus][more]
BLAST of CsaV3_1G003260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUQ9|A0A0A0LUQ9_CUCSA2.9e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003260.1CsaV3_1G003260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G003260CSPI01G03200Wild cucumber (PI 183967)cpicucB001
CsaV3_1G003260CsGy1G003180Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003260ClCG06G015380Watermelon (Charleston Gray)cucwcgB077
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003260Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003260Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G003260Silver-seed gourdcarcucB0419
CsaV3_1G003260Silver-seed gourdcarcucB0494
CsaV3_1G003260Silver-seed gourdcarcucB0497
CsaV3_1G003260Silver-seed gourdcarcucB0549
CsaV3_1G003260Silver-seed gourdcarcucB0627
CsaV3_1G003260Silver-seed gourdcarcucB0629
CsaV3_1G003260Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003260Cucumber (Gy14) v2cgybcucB013
CsaV3_1G003260Cucumber (Gy14) v1cgycucB146
CsaV3_1G003260Cucumber (Gy14) v1cgycucB314
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0061
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0115
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0244
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003260Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003260Cucurbita moschata (Rifu)cmocucB0047
CsaV3_1G003260Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003260Cucurbita moschata (Rifu)cmocucB0103
CsaV3_1G003260Cucurbita moschata (Rifu)cmocucB0230
CsaV3_1G003260Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0445
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0642
CsaV3_1G003260Cucurbita pepo (Zucchini)cpecucB0798
CsaV3_1G003260Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003260Wild cucumber (PI 183967)cpicucB016
CsaV3_1G003260Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003260Bottle gourd (USVL1VR-Ls)cuclsiB042
CsaV3_1G003260Bottle gourd (USVL1VR-Ls)cuclsiB071
CsaV3_1G003260Melon (DHL92) v3.5.1cucmeB020
CsaV3_1G003260Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003260Melon (DHL92) v3.5.1cucmeB046
CsaV3_1G003260Melon (DHL92) v3.6.1cucmedB018
CsaV3_1G003260Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003260Melon (DHL92) v3.6.1cucmedB043
CsaV3_1G003260Watermelon (Charleston Gray)cucwcgB062
CsaV3_1G003260Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003260Watermelon (97103) v1cucwmB069
CsaV3_1G003260Watermelon (97103) v1cucwmB071
CsaV3_1G003260Watermelon (97103) v1cucwmB094
CsaV3_1G003260Watermelon (97103) v2cucwmbB053
CsaV3_1G003260Watermelon (97103) v2cucwmbB055
CsaV3_1G003260Watermelon (97103) v2cucwmbB066
CsaV3_1G003260Wax gourdcucwgoB046
CsaV3_1G003260Wax gourdcucwgoB088