ClCG05G014660.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G014660.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon like protein
Location	CG_Chr05 : 25014051 .. 25014550 (+)
Sequence length	432

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGTACCTCTATTGAAATAAGCTTAAATCCACATTTGAGGCATGGATTTTTGAAGATTAGCTTCTCTTAGGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

mRNA sequence

ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

Coding sequence (CDS)

ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

Protein sequence

MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR

Homology

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BLAST of ClCG05G014660.1 vs. TrEMBL
Match: V7CEQ5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 34  KLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSSQM 93
           KL+  NYLLW+T  LPI++ +KL+GH+    PCPP FLP     ST+   N E     + 
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFLPRTTPGSTVKIPNPE---FEEW 81

Query: 94  IS--KVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           +S  ++++ WLY++M  ++A QLM  + +KELW+A +EL G   R+   Y +
Sbjct: 82  VSNHQLLLGWLYSTMRTDIASQLMRNSTLKELWDAAKELSGAHTRSRIVYYK 130

[Close]

BLAST of ClCG05G014660.1 vs. TrEMBL
Match: A0A151RKJ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1


Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M N+ S+ S+N           L  +L    + KL++ NY LWK+  LP L+ + L+G+L
Sbjct: 1   MANSNSSSSSN-----------LKNILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNM 120
                CPP F+ I           A+  S+ Q++    + WL NSM  EVA QL+     
Sbjct: 61  FGTTKCPPEFI-IDETGKKNNPAFADWTSTDQLL----LGWLINSMTQEVATQLLHCETS 120

Query: 121 KELWEAIQELFGIQLRAEEDYLR 144
           +++WE  Q L G   R+   +L+
Sbjct: 121 QQIWEDAQSLAGAHTRSRITFLK 127

[Close]

BLAST of ClCG05G014660.1 vs. TrEMBL
Match: A0A151QNK8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-09
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 27  LYQITNTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAE 86
           L  I + KL++ NY LWK+  + I++  +L+GH+     CP  F+    DSS       E
Sbjct: 13  LPSIVSVKLDRDNYPLWKSLVISIVKGCRLDGHMLGTKECPEEFIAS-ADSSKKPNPAFE 72

Query: 87  G--ASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
              A  SQ++      WL NSM +E+A QL+     K+LW+  Q L G   R+   YL+
Sbjct: 73  NWQAHDSQLLG-----WLMNSMTIEMATQLLHCETSKQLWDEAQSLAGAHTRSRVTYLK 125

[Close]

BLAST of ClCG05G014660.1 vs. TrEMBL
Match: A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 106 MMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           M  EVA+QLMGFN  K+LWEAIQ+LFG+QLRAEED+LR
Sbjct: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLR 38

[Close]

BLAST of ClCG05G014660.1 vs. TrEMBL
Match: A0A151R6N1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-07
Identity = 40/133 (30.08%), Postives = 63/133 (47.37%), Query Frame = 1


Query: 11  NGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMF 70
           N   S+  N   +  + Y I   KL++GNY LWK+  LP L+ + L+G++      P  F
Sbjct: 3   NSDSSSSSNLKNILSIPYSI---KLDRGNYRLWKSLVLPSLRGHNLDGYIFGTTKYPQEF 62

Query: 71  LPILGDSSTLVATNAEGASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQEL 130
           + I         T     S+ Q++    + WL NSM  EV  QL+ +   +++WE  Q L
Sbjct: 63  I-IDETGKKNTPTFVYWTSTDQLL----LGWLINSMTQEVTTQLLHYETSQQIWEDAQSL 122

Query: 131 FGIQLRAEEDYLR 144
            G   R    +L+
Sbjct: 123 AGAHTRLRITFLK 127

[Close]

BLAST of ClCG05G014660.1 vs. NCBI nr
Match: gi|593787208|ref|XP_007156643.1| (hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 34  KLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSSQM 93
           KL+  NYLLW+T  LPI++ +KL+GH+    PCPP FLP     ST+   N E     + 
Sbjct: 22  KLDHTNYLLWETTILPIIRGHKLDGHVFGNKPCPPEFLPRTTPGSTVKIPNPE---FEEW 81

Query: 94  IS--KVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           +S  ++++ WLY++M  ++A QLM  + +KELW+A +EL G   R+   Y +
Sbjct: 82  VSNHQLLLGWLYSTMRTDIASQLMRNSTLKELWDAAKELSGAHTRSRIVYYK 130

[Close]

BLAST of ClCG05G014660.1 vs. NCBI nr
Match: gi|828332633|ref|XP_004513130.2| (PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum])

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 32  NTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSS 91
           + KL++ NYLLWK+  LP+++  KL+G++     CP  F+      ST   T        
Sbjct: 22  SVKLDRDNYLLWKSLVLPLIRGCKLDGYIIGTKECPEQFI------STNDTTKKNNPDYE 81

Query: 92  QMIS--KVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           + I+  + ++ WL NS+ +++A QL+     KELW   Q L G   ++   YL+
Sbjct: 82  EWIAHDQALLGWLRNSVAIDIATQLLHCETSKELWNEAQSLTGAHTKSRTIYLK 129

[Close]

BLAST of ClCG05G014660.1 vs. NCBI nr
Match: gi|828335907|ref|XP_012575528.1| (PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum])

HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 1


Query: 32  NTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSS 91
           + KL++ NY LWK+  + I++ Y+L+GH+     CP  F+     +ST    N   A   
Sbjct: 18  SVKLDRDNYPLWKSLVISIVKGYRLDGHMLGTKECPEKFI-----ASTDSIKNPNPAFED 77

Query: 92  -QMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
            Q     ++ WL NSM  E+A QL+     K+LW+  Q L G   R+   YL+
Sbjct: 78  WQAHDSQLLGWLMNSMTTEMATQLLHCETSKQLWDEAQSLAGAHTRSRVTYLK 125

[Close]

BLAST of ClCG05G014660.1 vs. NCBI nr
Match: gi|1012331601|gb|KYP43069.1| (hypothetical protein KK1_035512 [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-09
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1


Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M N+ S+ S+N           L  +L    + KL++ NY LWK+  LP L+ + L+G+L
Sbjct: 1   MANSNSSSSSN-----------LKNILSIPCSVKLDRKNYRLWKSLVLPSLKGHNLDGYL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNM 120
                CPP F+ I           A+  S+ Q++    + WL NSM  EVA QL+     
Sbjct: 61  FGTTKCPPEFI-IDETGKKNNPAFADWTSTDQLL----LGWLINSMTQEVATQLLHCETS 120

Query: 121 KELWEAIQELFGIQLRAEEDYLR 144
           +++WE  Q L G   R+   +L+
Sbjct: 121 QQIWEDAQSLAGAHTRSRITFLK 127

[Close]

BLAST of ClCG05G014660.1 vs. NCBI nr
Match: gi|1012318520|gb|KYP31890.1| (hypothetical protein KK1_047566 [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 27  LYQITNTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAE 86
           L  I + KL++ NY LWK+  + I++  +L+GH+     CP  F+    DSS       E
Sbjct: 13  LPSIVSVKLDRDNYPLWKSLVISIVKGCRLDGHMLGTKECPEEFIAS-ADSSKKPNPAFE 72

Query: 87  G--ASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
              A  SQ++      WL NSM +E+A QL+     K+LW+  Q L G   R+   YL+
Sbjct: 73  NWQAHDSQLLG-----WLMNSMTIEMATQLLHCETSKQLWDEAQSLAGAHTRSRVTYLK 125

The following BLAST results are available for this feature:

BLAST of ClCG05G014660.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CEQ5_PHAVU	4.0e-15	40.18	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G005200g PE...	[more]
A0A151RKJ3_CAJCA	4.3e-09	31.47	Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1	[more]
A0A151QNK8_CAJCA	7.3e-09	34.45	Uncharacterized protein OS=Cajanus cajan GN=KK1_047566 PE=4 SV=1	[more]
A0A0A0K3F9_CUCSA	1.8e-07	76.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1	[more]
A0A151R6N1_CAJCA	4.0e-07	30.08	Uncharacterized protein OS=Cajanus cajan GN=KK1_040630 PE=4 SV=1	[more]

BLAST of ClCG05G014660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593787208\|ref\|XP_007156643.1\|	5.7e-15	40.18	hypothetical protein PHAVU_002G005200g, partial [Phaseolus vulgaris]	[more]
gi\|828332633\|ref\|XP_004513130.2\|	2.7e-09	31.58	PREDICTED: uncharacterized protein LOC101488260, partial [Cicer arietinum]	[more]
gi\|828335907\|ref\|XP_012575528.1\|	4.7e-09	33.63	PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]	[more]
gi\|1012331601\|gb\|KYP43069.1\|	6.1e-09	31.47	hypothetical protein KK1_035512 [Cajanus cajan]	[more]
gi\|1012318520\|gb\|KYP31890.1\|	1.0e-08	34.45	hypothetical protein KK1_047566 [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G014660	ClCG05G014660	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G014660.1	ClCG05G014660.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G014660.1.cds1	ClCG05G014660.1.cds1	CDS
ClCG05G014660.1.cds2	ClCG05G014660.1.cds2	CDS