ClCG03G013500.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G013500.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 27740411 .. 27740946 (-)
Sequence length	326

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATCATTTAGAATTTTGAAAGGAATAATTCACAAAGAATATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGTACCCCTATTTAATTTAATTTTTTATTTATTTATTTTTATTTTTATTTTTTGGTTCTTTGTCTTTTTAATTGATTCTATGGTAATATATACCGATTTATTTAATTGTTGACCTAAAAGAAAACAATAAGTTTCAATGCTTAACAAACTTTATGATTTATTTACTTACATATTAGATATTGAGTTTGGTGCATGGATTTTGTGAAAGCAGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGATCTTTCCAATTTCTTACTATGTTTTACTTTCAACACACAACACATTTT

mRNA sequence

ATTATCATTTAGAATTTTGAAAGGAATAATTCACAAAGAATATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGATCTTTCCAATTTCTTACTATGTTTTACTTTCAACACACAACACATTTT

Coding sequence (CDS)

ATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Protein sequence

MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIGLCFFFRTPSDTCLCRYPC

Homology

[Close]

BLAST of ClCG03G013500.1 vs. TrEMBL
Match: A0A0A0LH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077550 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.7e-32
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKD EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of ClCG03G013500.1 vs. TrEMBL
Match: A0A0B0MYS8_GOSAR (Defensin-like protein OS=Gossypium arboreum GN=F383_30904 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MK++SFSAI+LV+L I  G T ++     G C    H GGC+  EC + C+A+ G  A G
Sbjct: 1  MKTLSFSAILLVLLFISAG-TELKVANAIGSCVVFGHSGGCEINECFNACRAKLGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+  +TP+DTC+CR+PC
Sbjct: 61 FCYTIKTPNDTCMCRHPC 77

[Close]

BLAST of ClCG03G013500.1 vs. TrEMBL
Match: A0A061ELG6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020265 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MKS+SFSAI+L+VL +  G    R     G C+   HGGGC   EC + C+ ++G  A G
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNE-SRMANAIGSCDVLGHGGGCAIDECFNSCRMKYGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+    P+DTC+CR+PC
Sbjct: 61 FCYTINAPNDTCICRHPC 77

[Close]

BLAST of ClCG03G013500.1 vs. NCBI nr
Match: gi|700206181|gb|KGN61300.1| (hypothetical protein Csa_2G077550 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKD EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of ClCG03G013500.1 vs. NCBI nr
Match: gi|728823922|gb|KHG05522.1| (Defensin-like protein [Gossypium arboreum])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MK++SFSAI+LV+L I  G T ++     G C    H GGC+  EC + C+A+ G  A G
Sbjct: 1  MKTLSFSAILLVLLFISAG-TELKVANAIGSCVVFGHSGGCEINECFNACRAKLGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+  +TP+DTC+CR+PC
Sbjct: 61 FCYTIKTPNDTCMCRHPC 77

[Close]

BLAST of ClCG03G013500.1 vs. NCBI nr
Match: gi|590656421|ref|XP_007034266.1| (Uncharacterized protein TCM_020265 [Theobroma cacao])

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MKS+SFSAI+L+VL +  G    R     G C+   HGGGC   EC + C+ ++G  A G
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNE-SRMANAIGSCDVLGHGGGCAIDECFNSCRMKYGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+    P+DTC+CR+PC
Sbjct: 61 FCYTINAPNDTCICRHPC 77

The following BLAST results are available for this feature:

BLAST of ClCG03G013500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH75_CUCSA	9.7e-32	83.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077550 PE=4 SV=1	[more]
A0A0B0MYS8_GOSAR	1.0e-12	46.15	Defensin-like protein OS=Gossypium arboreum GN=F383_30904 PE=4 SV=1	[more]
A0A061ELG6_THECC	1.7e-12	44.87	Uncharacterized protein OS=Theobroma cacao GN=TCM_020265 PE=4 SV=1	[more]

BLAST of ClCG03G013500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206181\|gb\|KGN61300.1\|	1.4e-31	83.54	hypothetical protein Csa_2G077550 [Cucumis sativus]	[more]
gi\|728823922\|gb\|KHG05522.1\|	1.4e-12	46.15	Defensin-like protein [Gossypium arboreum]	[more]
gi\|590656421\|ref\|XP_007034266.1\|	2.5e-12	44.87	Uncharacterized protein TCM_020265 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G013500	ClCG03G013500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G013500.1	ClCG03G013500.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G013500.1.three_prime_UTR1	ClCG03G013500.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G013500.1.cds2	ClCG03G013500.1.cds2	CDS
ClCG03G013500.1.cds1	ClCG03G013500.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G013500.1.five_prime_UTR1	ClCG03G013500.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 30..78 score: 9.