ClCG03G013500 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G013500
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 27740411 .. 27740946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCATTTAGAATTTTGAAAGGAATAATTCACAAAGAATATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGTACCCCTATTTAATTTAATTTTTTATTTATTTATTTTTATTTTTATTTTTTGGTTCTTTGTCTTTTTAATTGATTCTATGGTAATATATACCGATTTATTTAATTGTTGACCTAAAAGAAAACAATAAGTTTCAATGCTTAACAAACTTTATGATTTATTTACTTACATATTAGATATTGAGTTTGGTGCATGGATTTTGTGAAAGCAGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGATCTTTCCAATTTCTTACTATGTTTTACTTTCAACACACAACACATTTT

mRNA sequence

ATTATCATTTAGAATTTTGAAAGGAATAATTCACAAAGAATATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGATCTTTCCAATTTCTTACTATGTTTTACTTTCAACACACAACACATTTT

Coding sequence (CDS)

ATGAAGTCCATCTCCTTCTCCGCCATTATTCTTGTGGTTTTACTCATCTTCAATGGAGAAACGATGATGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCATGGTGGAGGGTGCAAAGATGGTGAGTGTATGAGTGGCTGCAAAGCCCAATTTGGAGCAACGGCAATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Protein sequence

MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIGLCFFFRTPSDTCLCRYPC
Homology
[Close]
BLAST of ClCG03G013500 vs. TrEMBL
Match: A0A0A0LH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077550 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.7e-32
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKD EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]
BLAST of ClCG03G013500 vs. TrEMBL
Match: A0A0B0MYS8_GOSAR (Defensin-like protein OS=Gossypium arboreum GN=F383_30904 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MK++SFSAI+LV+L I  G T ++     G C    H GGC+  EC + C+A+ G  A G
Sbjct: 1  MKTLSFSAILLVLLFISAG-TELKVANAIGSCVVFGHSGGCEINECFNACRAKLGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+  +TP+DTC+CR+PC
Sbjct: 61 FCYTIKTPNDTCMCRHPC 77

[Close]
BLAST of ClCG03G013500 vs. TrEMBL
Match: A0A061ELG6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_020265 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MKS+SFSAI+L+VL +  G    R     G C+   HGGGC   EC + C+ ++G  A G
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNE-SRMANAIGSCDVLGHGGGCAIDECFNSCRMKYGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+    P+DTC+CR+PC
Sbjct: 61 FCYTINAPNDTCICRHPC 77

[Close]
BLAST of ClCG03G013500 vs. NCBI nr
Match: gi|700206181|gb|KGN61300.1| (hypothetical protein Csa_2G077550 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGET-MMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GET MMRSVEGEGLCEKALHGGGCKD EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]
BLAST of ClCG03G013500 vs. NCBI nr
Match: gi|728823922|gb|KHG05522.1| (Defensin-like protein [Gossypium arboreum])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MK++SFSAI+LV+L I  G T ++     G C    H GGC+  EC + C+A+ G  A G
Sbjct: 1  MKTLSFSAILLVLLFISAG-TELKVANAIGSCVVFGHSGGCEINECFNACRAKLGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+  +TP+DTC+CR+PC
Sbjct: 61 FCYTIKTPNDTCMCRHPC 77

[Close]
BLAST of ClCG03G013500 vs. NCBI nr
Match: gi|590656421|ref|XP_007034266.1| (Uncharacterized protein TCM_020265 [Theobroma cacao])

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-12
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 1  MKSISFSAIILVVLLIFNGETMMRSVEGEGLCEKALHGGGCKDGECMSGCKAQFGATAIG 60
          MKS+SFSAI+L+VL +  G    R     G C+   HGGGC   EC + C+ ++G  A G
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNE-SRMANAIGSCDVLGHGGGCAIDECFNSCRMKYGQDAHG 60

Query: 61 LCFFFRTPSDTCLCRYPC 79
           C+    P+DTC+CR+PC
Sbjct: 61 FCYTINAPNDTCICRHPC 77

The following BLAST results are available for this feature:
BLAST of ClCG03G013500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH75_CUCSA9.7e-3283.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077550 PE=4 SV=1[more]
A0A0B0MYS8_GOSAR1.0e-1246.15Defensin-like protein OS=Gossypium arboreum GN=F383_30904 PE=4 SV=1[more]
A0A061ELG6_THECC1.7e-1244.87Uncharacterized protein OS=Theobroma cacao GN=TCM_020265 PE=4 SV=1[more]
BLAST of ClCG03G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206181|gb|KGN61300.1|1.4e-3183.54hypothetical protein Csa_2G077550 [Cucumis sativus][more]
gi|728823922|gb|KHG05522.1|1.4e-1246.15Defensin-like protein [Gossypium arboreum][more]
gi|590656421|ref|XP_007034266.1|2.5e-1244.87Uncharacterized protein TCM_020265 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G013500.1ClCG03G013500.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 30..78
score: 9.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G013500Cla97C03G063710Watermelon (97103) v2wcgwmbB186
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G013500Cucumber (Gy14) v1cgywcgB242
ClCG03G013500Cucurbita maxima (Rimu)cmawcgB054
ClCG03G013500Cucurbita maxima (Rimu)cmawcgB113
ClCG03G013500Cucurbita maxima (Rimu)cmawcgB503
ClCG03G013500Cucurbita moschata (Rifu)cmowcgB045
ClCG03G013500Cucurbita moschata (Rifu)cmowcgB101
ClCG03G013500Cucurbita moschata (Rifu)cmowcgB552
ClCG03G013500Wild cucumber (PI 183967)cpiwcgB049
ClCG03G013500Cucumber (Chinese Long) v2cuwcgB046
ClCG03G013500Melon (DHL92) v3.5.1mewcgB207
ClCG03G013500Melon (DHL92) v3.5.1mewcgB245
ClCG03G013500Melon (DHL92) v3.5.1mewcgB380
ClCG03G013500Watermelon (97103) v1wcgwmB224
ClCG03G013500Watermelon (97103) v1wcgwmB240
ClCG03G013500Cucurbita pepo (Zucchini)cpewcgB327
ClCG03G013500Cucurbita pepo (Zucchini)cpewcgB599
ClCG03G013500Cucurbita pepo (Zucchini)cpewcgB670
ClCG03G013500Bottle gourd (USVL1VR-Ls)lsiwcgB065
ClCG03G013500Bottle gourd (USVL1VR-Ls)lsiwcgB364
ClCG03G013500Cucumber (Gy14) v2cgybwcgB043
ClCG03G013500Cucumber (Gy14) v2cgybwcgB514
ClCG03G013500Melon (DHL92) v3.6.1medwcgB237
ClCG03G013500Melon (DHL92) v3.6.1medwcgB373
ClCG03G013500Silver-seed gourdcarwcgB0165
ClCG03G013500Silver-seed gourdcarwcgB0454
ClCG03G013500Silver-seed gourdcarwcgB0901
ClCG03G013500Cucumber (Chinese Long) v3cucwcgB050
ClCG03G013500Cucumber (Chinese Long) v3cucwcgB581
ClCG03G013500Watermelon (97103) v2wcgwmbB181
ClCG03G013500Wax gourdwcgwgoB361
ClCG03G013500Wax gourdwcgwgoB362
ClCG03G013500Wax gourdwcgwgoB368
ClCG03G013500Watermelon (Charleston Gray)wcgwcgB122