ClCG03G012460.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G012460.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, unclassified
Location	CG_Chr03 : 25406235 .. 25407094 (+)
Sequence length	783

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGGATCATGGTTCTTTGATAAAGCTCTAATTCTATTCGAAGATCTCAAAGGAAACAAAAGCATCTCTAATCTGGATTTCAAGTACGCATCCTTTTGGATTCACTTTAACAATCTTCCCCTTGTAGGATTCACAAGGAAAATAGTAGGAGTGCTCGGAAATATGGTGGGAGAGTTAGAGAAAGTAGATCCGGAAGAAGAAAAAAGATGGTGGAACAAAACCCTGTGGATGCGCGTCAAAATGGATATTAGTAAACCTTTGAGGAGGTTGGTAAACGTGAAAGTCAGATCAATGGCCGAAGTGAGCAAGATACCAATAACCTATGAAAAATTGGGGGATTTTTGCTACGGTTACGGATTAATTAGGCATTTGTTAAAGGACTGTGAAACTCATCGAGGAACAATGGAGAAAGACTTACAATATAGTTCAATTCTTCATTTCAATGGGTCTATCCAAAATGGCGGAAAGGGGGGAAGCAAGGCCGGGAAATCCAAAGGAAAAAAGAGAAATGGGTGGAGGGCCAAAGAACAGCAACTACAGCAAAAGGGGGAACCAAGTCAAACACCGAAAGAGGGGAGACGAAAAGATGACCGAAGTAGATTGAATTTAGGTGCCCAATTGGAGGTTCAAATCTAGTTCTCTTGTGTAAATCTGGAGGGACATAACGAAAGTAAGGTCGAGATCGATCAAACTGAGAATAGGGATCTCCAAAAGAATCCAGTTCTAAGAAAGGAAAATCCAATGGATTAAGCCCCTATCGACGCTACCAAGGGAAGCAACGGAGTAACAGAGATGAACTGAGGCGGATCCAAGAAGACGAGGGGCGTATCCCGAGGAACAGTAACTTGGTCTGA

mRNA sequence

ATGGAAAGTGGATCATGGTTCTTTGATAAAGCTCTAATTCTATTCGAAGATCTCAAAGGAAACAAAAGCATCTCTAATCTGGATTTCAAGTACGCATCCTTTTGGATTCACTTTAACAATCTTCCCCTTGTAGGATTCACAAGGAAAATAGTAGGAGTGCTCGGAAATATGGTGGGAGAGTTAGAGAAAGTAGATCCGGAAGAAGAAAAAAGATGGTGGAACAAAACCCTGTGGATGCGCGTCAAAATGGATATTAGTAAACCTTTGAGGAGGTTGGTAAACGTGAAAGTCAGATCAATGGCCGAAGTGAGCAAGATACCAATAACCTATGAAAAATTGGGGGATTTTTGCTACGGTTACGGATTAATTAGGCATTTGTTAAAGGACTGTGAAACTCATCGAGGAACAATGGAGAAAGACTTACAATATAGTTCAATTCTTCATTTCAATGGGTCTATCCAAAATGGCGGAAAGGGGGGAAGCAAGGCCGGGAAATCCAAAGGAAAAAAGAGAAATGGGTGGAGGGCCAAAGAACAGCAACTACAGCAAAAGGGGGAACCAAGTCAAACACCGAAAGAGGGGAGACGAAAAGATGACCGAAGTAGATTGAATTTAGGTGCCCAATTGGAGGGATCTCCAAAAGAATCCAGTTCTAAGAAAGGAAAATCCAATGGATTAAGCCCCTATCGACGCTACCAAGGGAAGCAACGGAGTAACAGAGATGAACTGAGGCGGATCCAAGAAGACGAGGGGCGTATCCCGAGGAACAGTAACTTGGTCTGA

Coding sequence (CDS)

ATGGAAAGTGGATCATGGTTCTTTGATAAAGCTCTAATTCTATTCGAAGATCTCAAAGGAAACAAAAGCATCTCTAATCTGGATTTCAAGTACGCATCCTTTTGGATTCACTTTAACAATCTTCCCCTTGTAGGATTCACAAGGAAAATAGTAGGAGTGCTCGGAAATATGGTGGGAGAGTTAGAGAAAGTAGATCCGGAAGAAGAAAAAAGATGGTGGAACAAAACCCTGTGGATGCGCGTCAAAATGGATATTAGTAAACCTTTGAGGAGGTTGGTAAACGTGAAAGTCAGATCAATGGCCGAAGTGAGCAAGATACCAATAACCTATGAAAAATTGGGGGATTTTTGCTACGGTTACGGATTAATTAGGCATTTGTTAAAGGACTGTGAAACTCATCGAGGAACAATGGAGAAAGACTTACAATATAGTTCAATTCTTCATTTCAATGGGTCTATCCAAAATGGCGGAAAGGGGGGAAGCAAGGCCGGGAAATCCAAAGGAAAAAAGAGAAATGGGTGGAGGGCCAAAGAACAGCAACTACAGCAAAAGGGGGAACCAAGTCAAACACCGAAAGAGGGGAGACGAAAAGATGACCGAAGTAGATTGAATTTAGGTGCCCAATTGGAGGGATCTCCAAAAGAATCCAGTTCTAAGAAAGGAAAATCCAATGGATTAAGCCCCTATCGACGCTACCAAGGGAAGCAACGGAGTAACAGAGATGAACTGAGGCGGATCCAAGAAGACGAGGGGCGTATCCCGAGGAACAGTAACTTGGTCTGA

Protein sequence

MESGSWFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVDPEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRHLLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAKEQQLQQKGEPSQTPKEGRRKDDRSRLNLGAQLEGSPKESSSKKGKSNGLSPYRRYQGKQRSNRDELRRIQEDEGRIPRNSNLV

Homology

[Close]

BLAST of ClCG03G012460.1 vs. TrEMBL
Match: A0A0D2U033_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G348300 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 70/242 (28.93%), Postives = 116/242 (47.93%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W FD+ L      +  K   + +F ++ FW+   N+P     R++V  + N +GEL  +D
Sbjct: 106 WLFDRCLFSMLPFEKGKDFDSYEFWWSPFWLRIYNIPFELLERQMVLDVRNALGELVAID 165

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
             +    W + + ++VK+++ KPLRR+V V  R   EV  + I YE+L DFCYG G+I H
Sbjct: 166 WRDRNGGWTEFVRIKVKINVLKPLRRVVKVLDREGTEVIGV-IKYERLPDFCYGCGIIGH 225

Query: 126 LLKDCETHRGTM---EKDLQYSSILH----FNGSIQNGGKGGSKAGKSKGKKRNGWRAKE 185
             K C  ++      E +LQY S +     +    +N  + G +  KSK +       +E
Sbjct: 226 SSKICRHNKEASKLNESNLQYGSWMRAPLVYPTQDRNIRRNGVELMKSKDQMNAD--REE 285

Query: 186 QQLQQKGEPSQTPKEGRRKDDRSRLNLGAQLEGSPKESSSKKGKSNGLSPYRRYQGKQRS 241
            Q   +GE  Q  ++G+             +  SP E  S K   +GL    R++ K++ 
Sbjct: 286 SQSNSRGESEQMGQKGKETSGEEE-----SMSTSPWEKRSHKAMRDGLG---RFKSKRKR 336

[Close]

BLAST of ClCG03G012460.1 vs. TrEMBL
Match: C5Y174_SORBI (Putative uncharacterized protein Sb04g017843 (Fragment) OS=Sorghum bicolor GN=Sb04g017843 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 70/260 (26.92%), Postives = 118/260 (45.38%), Query Frame = 1


Query: 1   MESGSWFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGE 60
           +E G W F K L++  + +GNK+I  +DF +   WI  + +PL   TR+   ++G MVG+
Sbjct: 8   LEEGPWMFGKELVVVAEFEGNKTIDEVDFFFIPIWIRVHKMPLGLMTREAGELIGEMVGK 67

Query: 61  LEKVDPEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSK--IPITYEKLGDFCY 120
           +  VD +E  R   + L ++V++DI KPL R V + +      +    P+ YE L DFC+
Sbjct: 68  VLDVDADENGRAVGEFLRIKVRLDIRKPLMRGVTLDIGDGDHENNKWCPLVYEFLPDFCF 127

Query: 121 GYGLIRHLLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAKE 180
             GLI H+ + C  +        Q+S  L F   I    + G ++   K KK  G   +E
Sbjct: 128 ICGLIGHVDRACPYYAQNRSSP-QFSRALRF---IPERKRFGEESKDEKAKK--GLTFEE 187

Query: 181 QQLQQKGEPSQTPKEGRRKDDRSRLNLGAQLEGSPKESSSKKGKSNGLSPYRRYQGKQRS 240
                  E +   + G    D+ +  +    + +      K G S G     R +G+   
Sbjct: 188 TVEASVKEITDKARGGVVAVDKEKPMIKKDEKQTQSAGDKKPGGSRGFKRRERARGEGMG 247

Query: 241 NRDELRRIQEDEGRIPRNSN 259
            ++        E + PR+ +
Sbjct: 248 GKEASEEAVPTEKKRPRSKS 261

[Close]

BLAST of ClCG03G012460.1 vs. TrEMBL
Match: A0A0D2SDK4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_009G348500 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 48/141 (34.04%), Postives = 79/141 (56.03%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W FD+ L      +  K   + +F ++ FW+   N+PL    R+    +GN VG+L  +D
Sbjct: 96  WLFDRCLFSMLPFEKGKDFDSYEFWWSPFWLRIYNIPLELMDRQTALDVGNAVGKLVAID 155

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
            ++    W + + ++VK+++ KPLRR+V +  R  +EV+++ I YE+L DFCY  GL+ H
Sbjct: 156 WKDRNGGWTEFIRIKVKINVLKPLRRVVKLLDREGSEVTEV-IKYERLPDFCYACGLVGH 215

Query: 126 LLKDCETHR---GTMEKDLQY 144
           L K C  ++      E  LQY
Sbjct: 216 LSKTCNINKESWALTESSLQY 235

[Close]

BLAST of ClCG03G012460.1 vs. TrEMBL
Match: W9RRS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024909 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W  D+AL++ + L+      + DF Y+ FW+  +NLPL G   +I  ++G+++G    V 
Sbjct: 96  WSSDRALVVLKPLENGDMADSDDFCYSKFWVQLHNLPLEGRLSRIGEMVGDIIGSTVSVQ 155

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
            +++ R W + + +RV +DI+KP+RR V + +     +    + YEKL DFCYG G   H
Sbjct: 156 QDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKLPDFCYGCGKFGH 215

Query: 126 LLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAKEQQLQQKG 185
             ++C      +  DL   SIL +   ++    GG       G  R   R + +  +  G
Sbjct: 216 GTRECPAEGVAVVTDL---SILPYGSWLRAPRMGG-------GSHR---RVERRPARTHG 275

Query: 186 EPSQTPKEGRRKDDRSRLNLGAQ 209
           +    P  G      S L  G+Q
Sbjct: 276 DNLSRPLRGMEIPQISPLVSGSQ 285

[Close]

BLAST of ClCG03G012460.1 vs. TrEMBL
Match: W9RBJ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024925 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.5e-16
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W  D+AL++ + L+      + DF Y+ FW+  +NLPL G   +I  ++G+++G    V 
Sbjct: 96  WSSDRALVVLKPLENGDMADSDDFCYSKFWVQLHNLPLEGRLSRIGEMVGDIIGSTVSVQ 155

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
            +++ R W + + +RV +DI+KP+RR V + +     +    + YEKL DFCYG G   H
Sbjct: 156 QDDKGRCWGQYVRVRVVLDITKPIRRQVKIILGDGEYLVWTDLRYEKLPDFCYGCGKFGH 215

Query: 126 LLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGG 161
             ++C      +  DL   SIL +   ++    GG
Sbjct: 216 GTRECPAEGVAVVTDL---SILPYGSWLRAPRMGG 247

[Close]

BLAST of ClCG03G012460.1 vs. NCBI nr
Match: gi|763794260|gb|KJB61256.1| (hypothetical protein B456_009G348300 [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 70/242 (28.93%), Postives = 116/242 (47.93%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W FD+ L      +  K   + +F ++ FW+   N+P     R++V  + N +GEL  +D
Sbjct: 106 WLFDRCLFSMLPFEKGKDFDSYEFWWSPFWLRIYNIPFELLERQMVLDVRNALGELVAID 165

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
             +    W + + ++VK+++ KPLRR+V V  R   EV  + I YE+L DFCYG G+I H
Sbjct: 166 WRDRNGGWTEFVRIKVKINVLKPLRRVVKVLDREGTEVIGV-IKYERLPDFCYGCGIIGH 225

Query: 126 LLKDCETHRGTM---EKDLQYSSILH----FNGSIQNGGKGGSKAGKSKGKKRNGWRAKE 185
             K C  ++      E +LQY S +     +    +N  + G +  KSK +       +E
Sbjct: 226 SSKICRHNKEASKLNESNLQYGSWMRAPLVYPTQDRNIRRNGVELMKSKDQMNAD--REE 285

Query: 186 QQLQQKGEPSQTPKEGRRKDDRSRLNLGAQLEGSPKESSSKKGKSNGLSPYRRYQGKQRS 241
            Q   +GE  Q  ++G+             +  SP E  S K   +GL    R++ K++ 
Sbjct: 286 SQSNSRGESEQMGQKGKETSGEEE-----SMSTSPWEKRSHKAMRDGLG---RFKSKRKR 336

[Close]

BLAST of ClCG03G012460.1 vs. NCBI nr
Match: gi|823218710|ref|XP_012442045.1| (PREDICTED: uncharacterized protein LOC105767062 [Gossypium raimondii])

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 66/208 (31.73%), Postives = 104/208 (50.00%), Query Frame = 1


Query: 6   WFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEKVD 65
           W FD+ L      +  K I + +F ++ FW+   N+PL    R+    +GN VGEL  +D
Sbjct: 107 WLFDRCLFSMLPFEKGKDIESYEFGWSPFWLRIYNVPLELMDRQTALDVGNAVGELVAID 166

Query: 66  PEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLIRH 125
            ++    W +   ++VK+++ KPLRR+V +  R   EV+ + I YE+L DFCY  GLI H
Sbjct: 167 WKDRNGGWTEFFRIKVKINVLKPLRRVVKLVDREGLEVTGV-IKYERLPDFCYACGLIGH 226

Query: 126 LLKDCETHRGTM---EKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAKEQQLQ 185
             + C  ++ ++   E  LQY   +                 ++K  +RNG    +Q  Q
Sbjct: 227 SSRSCNYNKESLAMTESRLQYGGWMR---------APTVNLTQNKEIRRNGVEIVKQIAQ 286

Query: 186 QKG--EPSQTPKEGR--RKDDRSRLNLG 207
           +    E SQ+   GR  R D + R+NLG
Sbjct: 287 RSDDREESQSNSRGRVGRWDRKKRINLG 304

[Close]

BLAST of ClCG03G012460.1 vs. NCBI nr
Match: gi|985469308|ref|XP_015380691.1| (PREDICTED: uncharacterized protein LOC107174364 [Citrus sinensis])

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 49/174 (28.16%), Postives = 95/174 (54.60%), Query Frame = 1


Query: 1   MESGSWFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGE 60
           +  G W FD+AL++  + KG   ++   F + +FWI   N+P+    ++++  LG M+G 
Sbjct: 72  LTGGPWHFDRALLVLTEPKGIGELTKQSFTHTAFWIQIRNVPIACMEKELIQELGGMIGA 131

Query: 61  LEKVDPEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGY 120
           +E+++ +E      +   +RV ++I+ PL++++ +K    +++ ++P+ YE+L DFCY  
Sbjct: 132 VEEIETDENGECLGEFARIRVLINITLPLKKILFLKQEGESDI-QMPVVYERLPDFCYCC 191

Query: 121 GLIRHLLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGW 175
           G+I H  K+C   +G  ++ L Y   +    +I  GG+          K RN W
Sbjct: 192 GIIGHQYKECAKFQGQQKEQLPYGGWMK---AIIIGGRA--------RKNRNKW 233

[Close]

BLAST of ClCG03G012460.1 vs. NCBI nr
Match: gi|568862941|ref|XP_006484927.1| (PREDICTED: uncharacterized protein LOC102626623 [Citrus sinensis])

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-17
Identity = 61/219 (27.85%), Postives = 108/219 (49.32%), Query Frame = 1


Query: 1   MESGSWFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGE 60
           +  G W FDKALI+  +  G  SI    F + SFW+  + +P+    +  +  LG  +G+
Sbjct: 94  LTEGPWHFDKALIVLVEPVGMGSIKRQPFTHTSFWVQIHGMPIKCMVKGTIEKLGEKIGQ 153

Query: 61  LEKVDPEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGY 120
           +E+V+ +EE         +R+ +DI+KPL+R++ +K     ++  + I Y++L DFC+  
Sbjct: 154 VEEVETDEEGECIGPFARVRISVDITKPLKRILILKQEGEEDIVML-IKYDRLPDFCFCC 213

Query: 121 GLIRHLLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAKEQQ 180
           GLI H  ++C  ++G  ++ L Y   +    S +       K  KS+   +     +   
Sbjct: 214 GLIGHQFRECIQYKGQPKEKLIYGGWMKALTSFELAKLSRGKNRKSRRDDQPDATTRNTS 273

Query: 181 LQQKGEPSQTPKEGRRKDDRSRLN-LGAQLEGSPKESSS 219
           +Q + +P   PKE     + S+ + LG     SP E  S
Sbjct: 274 VQIQIQPK--PKEQPSNPNPSKHDGLGVTQVDSPSEEMS 309

[Close]

BLAST of ClCG03G012460.1 vs. NCBI nr
Match: gi|985472039|ref|XP_015381386.1| (PREDICTED: uncharacterized protein LOC107174768 [Citrus sinensis])

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 55/206 (26.70%), Postives = 103/206 (50.00%), Query Frame = 1


Query: 4   GSWFFDKALILFEDLKGNKSISNLDFKYASFWIHFNNLPLVGFTRKIVGVLGNMVGELEK 63
           G W FD ALI+F +  G   I    F + SFWI F+N+PL+   +  V  LG+++G++E 
Sbjct: 97  GPWHFDNALIVFTEPTGVGDIKKQSFSHTSFWIQFHNVPLMCMDKYAVQKLGSLIGKVED 156

Query: 64  VDPEEEKRWWNKTLWMRVKMDISKPLRRLVNVKVRSMAEVSKIPITYEKLGDFCYGYGLI 123
           VD +E        +  R+ +D+++PL++++ ++     + + I + YE+L  FC+  GL+
Sbjct: 157 VDTDEVGECVGPIVRTRISVDVTRPLKKIMFLQQEDRVK-TPIGVQYERLPKFCFCCGLV 216

Query: 124 RHLLKDCETHRGTMEKDLQYSSILHFNGSIQNGGKGGSKAGKSKGKKRNGWRAK--EQQL 183
            H  ++C  ++G  ++ L Y S L      +            K ++R  W  +  +Q L
Sbjct: 217 GHQYRECLKYKGQQKEKLAYGSWLKALPVTE---------WNRKNRRRGKWNKEHHQQNL 276

Query: 184 QQKGEPSQTPKEGRRKDDRSRLNLGA 208
           +     SQ   + R+     + + G+
Sbjct: 277 EMVNTASQNQNQTRQTQSNPKKDNGS 292

The following BLAST results are available for this feature:

BLAST of ClCG03G012460.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2U033_GOSRA	1.4e-18	28.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G348300 PE=4 SV=1	[more]
C5Y174_SORBI	4.5e-17	26.92	Putative uncharacterized protein Sb04g017843 (Fragment) OS=Sorghum bicolor GN=Sb...	[more]
A0A0D2SDK4_GOSRA	3.8e-16	34.04	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_009G348500 PE=...	[more]
W9RRS1_9ROSA	6.5e-16	29.06	Uncharacterized protein OS=Morus notabilis GN=L484_024909 PE=4 SV=1	[more]
W9RBJ0_9ROSA	8.5e-16	31.61	Uncharacterized protein OS=Morus notabilis GN=L484_024925 PE=4 SV=1	[more]

BLAST of ClCG03G012460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763794260\|gb\|KJB61256.1\|	2.0e-18	28.93	hypothetical protein B456_009G348300 [Gossypium raimondii]	[more]
gi\|823218710\|ref\|XP_012442045.1\|	1.7e-17	31.73	PREDICTED: uncharacterized protein LOC105767062 [Gossypium raimondii]	[more]
gi\|985469308\|ref\|XP_015380691.1\|	2.2e-17	28.16	PREDICTED: uncharacterized protein LOC107174364 [Citrus sinensis]	[more]
gi\|568862941\|ref\|XP_006484927.1\|	3.8e-17	27.85	PREDICTED: uncharacterized protein LOC102626623 [Citrus sinensis]	[more]
gi\|985472039\|ref\|XP_015381386.1\|	5.0e-17	26.70	PREDICTED: uncharacterized protein LOC107174768 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283
IPR025836	Zn_knuckle_CX2CX4HX4C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G012460	ClCG03G012460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G012460.1	ClCG03G012460.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G012460.1.cds1	ClCG03G012460.1.cds1	CDS
ClCG03G012460.1.cds2	ClCG03G012460.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 1..81 score: 7.5
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 83..131 score: 6.9
None	No IPR available	PANTHER	PTHR31286	FAMILY NOT NAMED	coord: 1..144 score: 1.8
None	No IPR available	PANTHER	PTHR31286:SF3	SUBFAMILY NOT NAMED	coord: 1..144 score: 1.8