ClCG02G010060.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010060.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding protein-like protein
Location	CG_Chr02 : 16961577 .. 16963465 (+)
Sequence length	815

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGTTAGCATGAAAAACACCCATTTCTCCAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCGTCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGTTCGTGTCTCTTCCTCAATCCAGTCCCACAGTTGCAGCACCCACAGTTGCAGCACCCACATGATTCAAATGGTATATACATTGAATTTGATCTTGTTTGTTCCTGTGGCTTTCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGGTAATCGTGAATGCTGTGTTAAAGCATTTTGATGTATGAGTTGTAGTCTACGTGTTCGACGAAATGTCTAGTCTATTTCAGACCTCAATTCATCACGTGTACTTCTGGGTCGAAACTTTTGCTTCGTTGACATTCATAATTCCAAGGATTTTCTTTTAAAAACAAAATTTGTTTCATTAAAGTTTCCTGTTTTATGAGTTTTGTAACGAGAGACTTAGTGCCTGGTTGAAATTAGGAGAGCAAATGACTGTCAGATGAGTAGGATCAGGAGCATATTGTTTTGTAGCATTTTACTATCCTTCTGCAATTTTCTTGAAATGTTGAGACTGCAAAACAATGAGATATATAGAGATTGAAGTACAACGAATTTGAGAGGTGGGAAATTAGAATTTATATATGAGCTGAAAGGAATTTGATGTCCATTGGTAATCACTATAGAACTTCAACCACAAAATAGCTTATGGCCACGGAGGTCCTTTGATATAGTTAAAGATGAATGACCAGTGTGAAACTTCAGTGTTGATGTCCATTGTAAAGGAACTTTGATGTCCATTGGTGACCACTTTTGAAATTTCACCAGCAAATATCCTATGGATTCCATTTGATGTAGTTAGGATAAAATTCAATGACCACTGAAACTTCAGTGATCATCACTATACGAACTTTGATATCCAGTAGTGATCACTCTGAAACTTCATCAGTAAATTTCTTATTGAGTTGAGTTCTTATGTTAAGATTTGAATGGCTTATATGTTCTCTTGACAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGTTAATTAGTAAGAAATTATTTGACGGGGTTTAGTCTATCATCATAAATTACTCAAGAAAGTCATCGCATCACTTGCAGGCGTTATTAGGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTCTTGAAGCTCTTGGTATTTCATCTACCTATAGGAATATGTAATCTCGAACTGTTCAATTCCTACTTCTTAGTTTAATTTTGCACGTTGACTTGGTTTTGCAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTACTAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTACGATTTATTTTGTGTCCATGATAGATGTTCCCAATTTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG

mRNA sequence

CTTTGGTTAGCATGAAAAACACCCATTTCTCCAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCGTCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTACTAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTACGATTTATTTTGTGTCCATGATAGATGTTCCCAATTTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG

Coding sequence (CDS)

ATGATGAGCAACATGAACACCTTGATACTGCTTGGCAGAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAGCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCTTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGGTGGGCCAAAGGTGTGGAAACCAATAG

Protein sequence

MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ

Homology

[Close]

BLAST of ClCG02G010060.1 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ClCG02G010060.1 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-16
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 107 DAMDGK-ASRRPLRISFALDKVRGG 131
            A+DG+    R +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of ClCG02G010060.1 vs. Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ClCG02G010060.1 vs. Swiss-Prot
Match: RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 44  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQ 103
           S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 104 CAKDAMDGKA-SRRPLRISFALDKVRG 130
            A  AM+G++   R +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of ClCG02G010060.1 vs. Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +E+ A  A 
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query: 107 DAMDGK 113
            AM+G+
Sbjct: 90  SAMNGQ 95

[Close]

BLAST of ClCG02G010060.1 vs. TrEMBL
Match: A0A0A0LQB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.5e-60
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ 152
           SFALDKVRG PVV+PRLSN+NN+VG+R GNQ
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRRYGNQ 148

[Close]

BLAST of ClCG02G010060.1 vs. TrEMBL
Match: W9QHY3_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-41
Identity = 99/149 (66.44%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 1   MMSNMNTLIL-LGRKALTN-----IQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAG 60
           M S  NTL+  L R+A +       Q P L  R FCS  S SS+PSSS +  NNKLFV G
Sbjct: 1   MSSMSNTLMSSLARRAASTTTIPVFQNPFLGLRCFCS--SPSSSPSSSSTTSNNKLFVGG 60

Query: 61  LSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA- 120
           LSWS+DE+SLKDAFSSFGEV+EVRI+YDKDSGRSRGFGFV+F  E DA  AKD+MDGKA 
Sbjct: 61  LSWSVDEKSLKDAFSSFGEVSEVRILYDKDSGRSRGFGFVHFLKEEDAVSAKDSMDGKAL 120

Query: 121 SRRPLRISFALDKVRGGPVVIPRLSNVNN 143
             RPLRISFAL+KVRG PVV+PRLSNV +
Sbjct: 121 LGRPLRISFALEKVRGVPVVVPRLSNVGD 147

[Close]

BLAST of ClCG02G010060.1 vs. TrEMBL
Match: D7TEC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39
Identity = 90/135 (66.67%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 6   NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLK 65
           N+L+ L R+ALT +Q P   +R FCS  S  + PS      N KLFVAGLSWS+DE+SLK
Sbjct: 3   NSLVSLARRALT-VQNPAADWRCFCSSPSFPTPPS------NTKLFVAGLSWSVDEKSLK 62

Query: 66  DAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFAL 125
           DAFSSFG+VTEVRIMYDKDSGRSRGFGFV F+ E DA+ AKDAMDGKA   RPLR+S+AL
Sbjct: 63  DAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYAL 122

Query: 126 DKVRGGPVVIPRLSN 140
           +KVRGGP+V+PR  N
Sbjct: 123 EKVRGGPIVVPRRLN 130

[Close]

BLAST of ClCG02G010060.1 vs. TrEMBL
Match: A0A061DMK3_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_002154 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.3e-39
Identity = 84/118 (71.19%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 25  SFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKD 84
           S+R++CS  SSS+ P      PN KLFVAGLSWS+DE+SLKDAFSSFG V+EVRIMYDKD
Sbjct: 24  SWRFYCSPTSSSTRPP-----PNGKLFVAGLSWSVDEKSLKDAFSSFGHVSEVRIMYDKD 83

Query: 85  SGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVN 142
           +GRSRGFGFV+F+ E++A+CAKDAMDGKA   RPLRISFAL+K+RG PVV+PRL N N
Sbjct: 84  TGRSRGFGFVHFSKEDEARCAKDAMDGKALLGRPLRISFALEKIRGAPVVVPRLPNGN 136

[Close]

BLAST of ClCG02G010060.1 vs. TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 86/118 (72.88%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 27  RYFCSQASSSSAPSSSPSAP-NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDS 86
           R   S A  ++   +SPS P N+KLFVAGLSWS+DE+SLKDAFSSFGEV+EVRIMYDKDS
Sbjct: 3   RALISVAKRATTLHNSPSPPPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDS 62

Query: 87  GRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVRGGPVVIPRLSNVNN 143
           GRSRGFGFVNF+ EN+A CAKDAMDGKA   RPLRISFAL+KVRGGP+V+PRLS+  +
Sbjct: 63  GRSRGFGFVNFSKENEAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGD 120

[Close]

BLAST of ClCG02G010060.1 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-36
Identity = 83/133 (62.41%), Postives = 95/133 (71.43%), Query Frame = 1


Query: 6   NTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLK 65
           N + LL R+     Q  I S  +F  Q  +SS+ S     P++KLF+ GLSWS+DE+SLK
Sbjct: 4   NGIELLVRRVSAIPQHSISSSFHFLPQFCTSSSAS-----PSSKLFIGGLSWSVDEQSLK 63

Query: 66  DAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFAL 125
           DAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  AKDAMDGK    RPLRISFAL
Sbjct: 64  DAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFAL 123

Query: 126 DKVRGGPVVIPRL 138
           ++VRGGPVV+PRL
Sbjct: 124 ERVRGGPVVVPRL 131

[Close]

BLAST of ClCG02G010060.1 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A ++
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ClCG02G010060.1 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-17
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 107 DAMDGK-ASRRPLRISFALDKVRGG 131
            A+DG+    R +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of ClCG02G010060.1 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-17
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 107 DAMDGK-ASRRPLRISFALDK 127
             MDGK  + R +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ClCG02G010060.1 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-15
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 47  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAK 106
           + KL++ GLS   DE SLKDAFSSF  VTE R+M +K +GRSRG+GFVNF +E+ A  A 
Sbjct: 30  STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89

Query: 107 DAMDGK 113
            AM+G+
Sbjct: 90  SAMNGQ 95

[Close]

BLAST of ClCG02G010060.1 vs. NCBI nr
Match: gi|659111830|ref|XP_008455929.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 125/148 (84.46%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MMSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMD 60
           MMSN NTL+LL RKALTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMD
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ--STSALSSSPSAPSNKLFVAGLSWSMD 77

Query: 61  ERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLR 120
           ERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NENDAQCAKDAMDGKA   RPL+
Sbjct: 78  ERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLK 137

Query: 121 ISFALDKVRGGPVVIPRLSNVNNMVGQR 148
           ISFAL+KVRGGPV +PRLSN+NN+VG+R
Sbjct: 138 ISFALEKVRGGPVAVPRLSNINNLVGRR 163

[Close]

BLAST of ClCG02G010060.1 vs. NCBI nr
Match: gi|700208100|gb|KGN63219.1| (hypothetical protein Csa_2G416100 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-60
Identity = 123/151 (81.46%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQRCGNQ 152
           SFALDKVRG PVV+PRLSN+NN+VG+R GNQ
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRRYGNQ 148

[Close]

BLAST of ClCG02G010060.1 vs. NCBI nr
Match: gi|449468384|ref|XP_004151901.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-58
Identity = 120/147 (81.63%), Postives = 129/147 (87.76%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDE 61
           MSN NT +LL RKALTNIQTP L FR FCSQ++S   P SS  +PNNKLFVAGLSWSMDE
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS---PLSSSPSPNNKLFVAGLSWSMDE 60

Query: 62  RSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRI 121
           RSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQCAKDAMDGKA   RPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRI 120

Query: 122 SFALDKVRGGPVVIPRLSNVNNMVGQR 148
           SFALDKVRG PVV+PRLSN+NN+VG+R
Sbjct: 121 SFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of ClCG02G010060.1 vs. NCBI nr
Match: gi|1009158381|ref|XP_015897259.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 181.8 bits (460), Expect = 8.9e-43
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 10  LLGRKALTNIQTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFS 69
           ++ R+A T I  P LS+R + S  SSSS PS      N+KLFV GLSWS+DE+SLKDAFS
Sbjct: 8   IIFRRASTTIHNPTLSWRCYFSPPSSSSPPS------NSKLFVGGLSWSVDEKSLKDAFS 67

Query: 70  SFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPLRISFALDKVR 129
           SFGEVTEVRI+YDKDSGRSRGFGFV+F+ ENDA+CAKDAMDGKA   RPLRISFA DKVR
Sbjct: 68  SFGEVTEVRILYDKDSGRSRGFGFVHFSMENDAKCAKDAMDGKAFLGRPLRISFAFDKVR 127

Query: 130 GGPVVIPRLSNVNN 143
           GGPVVIPRL+N+ +
Sbjct: 128 GGPVVIPRLTNIED 135

[Close]

BLAST of ClCG02G010060.1 vs. NCBI nr
Match: gi|658013638|ref|XP_008342125.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Malus domestica])

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-41
Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 2   MSNMNTLILLGRKALTNI--QTPILSFRYFCSQASSSSAPSSSPSAPNNKLFVAGLSWSM 61
           M N     LL R+A T I  Q P LS R+FC+  SSSS+ SS P  PNN+LFV GLSWS+
Sbjct: 4   MRNNTLWTLLARRASTTITIQNPTLSRRFFCAPPSSSSSSSSPP--PNNRLFVGGLSWSV 63

Query: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKA-SRRPL 121
           DE+SLKDAFSSFGEVTEV+I+YD+DSGRSRGFGFVNF+ E++AQ AKDAMDGKA   RPL
Sbjct: 64  DEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPL 123

Query: 122 RISFALDKVRGGPVVIPRL 138
           R++ A++KVRGGP V+PRL
Sbjct: 124 RVTSAVEKVRGGPAVVPRL 140

The following BLAST results are available for this feature:

BLAST of ClCG02G010060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG4_ARATH	3.2e-16	51.85	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG3_ARATH	5.4e-16	44.71	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBG2_ARATH	1.6e-15	48.15	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
RBM3_CAPHI	6.6e-14	45.98	RNA-binding protein 3 OS=Capra hircus GN=RBM3 PE=2 SV=2	[more]
RT19_ARATH	1.1e-13	57.58	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 S...	[more]

BLAST of ClCG02G010060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB7_CUCSA	2.5e-60	81.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416100 PE=4 SV=1	[more]
W9QHY3_9ROSA	3.4e-41	66.44	Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004070 PE=4 SV=1	[more]
D7TEC9_VITVI	2.4e-39	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=...	[more]
A0A061DMK3_THECC	9.3e-39	71.19	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_002154 PE=4 SV=1	[more]
B9SH52_RICCO	1.6e-38	72.88	Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 P...	[more]

BLAST of ClCG02G010060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08000.1	2.9e-36	62.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.8e-17	51.85	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	3.1e-17	44.71	glycine-rich RNA-binding protein 3	[more]
AT4G13850.1	8.9e-17	48.15	glycine-rich RNA-binding protein 2	[more]
AT5G47320.1	6.4e-15	57.58	ribosomal protein S19	[more]

BLAST of ClCG02G010060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111830\|ref\|XP_008455929.1\|	1.1e-61	84.46	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
gi\|700208100\|gb\|KGN63219.1\|	3.6e-60	81.46	hypothetical protein Csa_2G416100 [Cucumis sativus]	[more]
gi\|449468384\|ref\|XP_004151901.1\|	2.0e-58	81.63	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis sativ...	[more]
gi\|1009158381\|ref\|XP_015897259.1\|	8.9e-43	70.90	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Ziziphus jujuba]	[more]
gi\|658013638\|ref\|XP_008342125.1\|	3.7e-41	66.91	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Malus domesti...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G010060	ClCG02G010060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G010060.1	ClCG02G010060.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G010060.1.five_prime_UTR1	ClCG02G010060.1.five_prime_UTR1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G010060.1.cds1	ClCG02G010060.1.cds1	CDS
ClCG02G010060.1.cds2	ClCG02G010060.1.cds2	CDS
ClCG02G010060.1.cds3	ClCG02G010060.1.cds3	CDS
ClCG02G010060.1.cds4	ClCG02G010060.1.cds4	CDS
ClCG02G010060.1.cds5	ClCG02G010060.1.cds5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G010060.1.three_prime_UTR1	ClCG02G010060.1.three_prime_UTR1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..112 score: 3.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..121 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 48..125 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 31..128 score: 1.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 31..131 score: 7.12
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 47..126 score: 2.1E-24coord: 1..6 score: 2.1