ClCG01G011530.1 (mRNA) Watermelon (Charleston Gray)

NameClCG01G011530.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCLAVATA3 LENGTH=96
LocationCG_Chr01 : 19058802 .. 19062721 (-)
Sequence length255
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGACAGTAACAAAAAGAAATAATAATAGGTTAGGTGAGAGATGATGATACATATTGGCGTTTGGAGTGTCACCATCTTAATTGCTTGTGTCATATTAAGTCACTTAATAATCATAATTTCTCCACAAATGGCTGCATGAGCAATCATTGACACTTCTATATACATATATATTACCTTAAACCTCTCTACTTTTCTTCTCATAATTCCCTATAACTTACACACAACAATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGGTTCCCTTCATCATCTCTCCTTTTTATTATTCCCAACCATATTTCAGTTTCTCATACCTTACCTCATTACATTAATTCTTCTACCTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTCTTTCCTTATAGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACGTAAGATCTTACAGACATCTATTATAAAAGTTTGATGTTGCATACAAAGGAAGATTAATGTTCAAATACTATGTTCTTGTCCCTAAAACAAAGTACACTATGTCCTTTTGACTAAGTATTGTCAATCTTATTTTAACTATAAAATTGAAATCTTTCAATTTTCAAATAGATATGTTTCTTTGCTCCTGTTCTATTACTAAATTTGTTATGGAATGCTTATTCTATTTTATGAGAAATTTTTTGTGTTTTTGTATTACCTACCCCTAATCTTTACACTATTTCTTTTTTTAAAAAATAAAGAATTGAAGATATTGACATGACAAGTAGCATATCTATAAAAAAAGGATCTATTTTATATATGTAGAGCTGAAAGGATGGTGTTGCGAATATATATATTTGAATAGTGTTGCAAAATAACTATGTTTTTTTTTTAAGAAAAAAATCTATTATTCTTAAAGGATCTTTTAATGTGACAACTAATTATAGAAATAGTACCATGTAGTATGAAAATAATTTCTATTTTATCTATATGAAGAATTGTTTTTATTTACAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MGTIIIAAGELADVVAFPLSCPSLERFRSAGRYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP
BLAST of ClCG01G011530.1 vs. NCBI nr
Match: gi|659118088|ref|XP_008458944.1| (PREDICTED: protein CLAVATA 3 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          R M+ E KKEME+G  GGKR R   EWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 3  RKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 55

BLAST of ClCG01G011530.1 vs. NCBI nr
Match: gi|1009113381|ref|XP_015873114.1| (PREDICTED: protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query: 35  LQERKKEMEKGADGGKR-RRPPVEWE-QLRRVPSGPDPLHHNGGSPKKPRTP 85
           L+E+K+E+ K A  G       + W+ QLR+VPSGPDPLHHNG SPKKPRTP
Sbjct: 55  LKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPLHHNGNSPKKPRTP 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659118088|ref|XP_008458944.1|4.4e-1577.36PREDICTED: protein CLAVATA 3 [Cucumis melo][more]
gi|1009113381|ref|XP_015873114.1|1.5e-0759.62PREDICTED: protein CLAVATA 3 [Ziziphus jujuba][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG01G011530ClCG01G011530gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG01G011530.1ClCG01G011530.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG01G011530.1.cds3ClCG01G011530.1.cds3CDS
ClCG01G011530.1.cds2ClCG01G011530.1.cds2CDS
ClCG01G011530.1.cds1ClCG01G011530.1.cds1CDS


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36349FAMILY NOT NAMEDcoord: 34..84
score: 9.1
NoneNo IPR availablePANTHERPTHR36349:SF2PROTEIN CLAVATA 3coord: 34..84
score: 9.1