Cla008871 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008871
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1370422 .. 1370805 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

mRNA sequence

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Coding sequence (CDS)

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Protein sequence

MAEETCPVASRINLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCHGECLPPPPPESPSI

Homology

[Close]

BLAST of Cla008871 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of Cla008871 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of Cla008871 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 24  LRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQD 83
           LRLCLL R R  R  S    DD+KV  R   E Q RIA +S V +L+   S+S +G  ++
Sbjct: 16  LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER-ASSSRYGGYEE 75

Query: 84  DVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 76  DVDQRAEIFIENFRRQLRLERQISLQLRY 103

The following BLAST results are available for this feature:

BLAST of Cla008871 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	4.8e-12	48.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]

BLAST of Cla008871 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	6.8e-12	48.67	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	1.1e-09	50.56	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008871	Cla008871.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 81..113 score: 6.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008871	Cucurbita moschata (Rifu)	cmowmB285
Cla008871	Cucurbita moschata (Rifu)	cmowmB783
Cla008871	Wild cucumber (PI 183967)	cpiwmB200
Cla008871	Melon (DHL92) v3.5.1	mewmB446
Cla008871	Watermelon (Charleston Gray)	wcgwmB056
Cla008871	Cucumber (Chinese Long) v2	cuwmB200
Cla008871	Cucurbita pepo (Zucchini)	cpewmB202
Cla008871	Cucurbita pepo (Zucchini)	cpewmB829
Cla008871	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008871	Cucumber (Gy14) v2	cgybwmB188
Cla008871	Melon (DHL92) v3.6.1	medwmB438
Cla008871	Silver-seed gourd	carwmB0425
Cla008871	Silver-seed gourd	carwmB0678
Cla008871	Cucumber (Chinese Long) v3	cucwmB209
Cla008871	Watermelon (97103) v2	wmwmbB056
Cla008871	Wax gourd	wgowmB575
Cla008871	Cucumber (Gy14) v1	cgywmB583
Cla008871	Cucurbita maxima (Rimu)	cmawmB292
Cla008871	Cucurbita maxima (Rimu)	cmawmB789