Cla008871.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008871
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1370422 .. 1370805 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

mRNA sequence

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Coding sequence (CDS)

ATGGCAGAGGAGACGTGCCCAGTGGCGTCCCGCATCAATCTGTTGAAGAAACTCACCTTATTTCCCTCTCTCCGCCTCTGCCTTCTCCGCCCCCGACGTCCCCGCCCACCCTCCCCCCGACGTTCCGACGACCGGAAAGTCAGCACACGGCGTTTCTTCGAAGCTCAGAGGAGAATCGCTCTAAATTCTTCTGTCACACAGCTTCAACCACCTACTTCCACTTCATCCCATGGAAGCCGTCAAGACGATGTCGATCACCGTGCGCAGATTTTCATCCATAATGTTCGCACTCAATTGAGGTTACAACCACAAGTTTCTATGCAATCAAGGTACTGTCATGGAGAATGCTTGCCGCCGCCACCGCCGGAATCGCCGTCCATTTGA

Protein sequence

MAEETCPVASRINLLKKLTLFPSLRLCLLRPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRYCHGECLPPPPPESPSI

Homology

[Close]

BLAST of Cla008871 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of Cla008871 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-12
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 1   MAEETCPVASRIN-LLKKLTLFPSLRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRR 60
           MAE+  P+ASR+   L KL     LRLCLL R R  R  S    DD+KV  R   E Q R
Sbjct: 1   MAEKKSPMASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSR 60

Query: 61  IALNSSVTQLQPPTSTSSHGSRQDDVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           IA +S V +L+   S+S +G  ++DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 61  IAESSFVRKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of Cla008871 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 24  LRLCLL-RPRRPRPPSPRRSDDRKVSTRRFFEAQRRIALNSSVTQLQPPTSTSSHGSRQD 83
           LRLCLL R R  R  S    DD+KV  R   E Q RIA +S V +L+   S+S +G  ++
Sbjct: 16  LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLER-ASSSRYGGYEE 75

Query: 84  DVDHRAQIFIHNVRTQLRLQPQVSMQSRY 112
           DVD RA+IFI N R QLRL+ Q+S+Q RY
Sbjct: 76  DVDQRAEIFIENFRRQLRLERQISLQLRY 103

The following BLAST results are available for this feature:

BLAST of Cla008871 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	4.8e-12	48.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]

BLAST of Cla008871 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	6.8e-12	48.67	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	1.1e-09	50.56	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla008871	Cla008871	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla008871	Cla008871.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla008871.1.cds1	Cla008871.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 81..113 score: 6.