Cla008859.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG MNHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDEDENEEDEEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
BLAST of Cla008859 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.6e-63 Identity = 113/155 (72.90%), Postives = 131/155 (84.52%), Query Frame = 1
BLAST of Cla008859 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.1e-14 Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1
BLAST of Cla008859 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 9.7e-76 Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1
BLAST of Cla008859 vs. TrEMBL
Match: A0A061GE46_THECC (PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.0e-64 Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = 1
BLAST of Cla008859 vs. TrEMBL
Match: A5AD85_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g00630 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64 Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 1
BLAST of Cla008859 vs. TrEMBL
Match: A0A068V2P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64 Identity = 113/152 (74.34%), Postives = 136/152 (89.47%), Query Frame = 1
BLAST of Cla008859 vs. TrEMBL
Match: A0A0B0NVC2_GOSAR (Protein PAM68, chloroplastic-like protein OS=Gossypium arboreum GN=F383_22471 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.1e-63 Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 1
BLAST of Cla008859 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76 Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 1
BLAST of Cla008859 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76 Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 1
BLAST of Cla008859 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75 Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1
BLAST of Cla008859 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75 Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1
BLAST of Cla008859 vs. NCBI nr
Match: gi|747089912|ref|XP_011092614.1| (PREDICTED: protein PAM68, chloroplastic [Sesamum indicum]) HSP 1 Score: 259.6 bits (662), Expect = 3.5e-66 Identity = 127/158 (80.38%), Postives = 137/158 (86.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
|