Cla008856.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTTTCACATTGACTTTTAAATCCTGCCAAACTTAATTAAAACAACTATTTCATCTTTTGTCTTAAAAATTAAATTTATTTTTTCTTGATTTGCATATTTCTTAACTAAAAAAGTCGAATTCTTATTCAAATTTCAAAAACAAAAACAATTTTTCTAAAACAATTTTTTTTTAGTTTTCAAATTTTTGCTTGATTTTTTAAAATATTGGTAAAAAGGTGGAATGAGTGCTTATAGTCTTAATTTTAAAAAACTAAAAACCAAGAACCTTACTAAACATTAAACAAGGCCTCCATTTATCTTTTCCTATTGAATAAACCACTTTTTTTAGTTTTAGAACTTGAGTAGAATTAATAACAAAACATAGAAATTTATGGATAAAAATAGTATTTATAAGCTTAATTTTTAAATGGCCTTTATTTTTTTTTCTTTTTTTTATTTTTTTCTTTTCTGGTTTGTTACGTAAATGTAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS
BLAST of Cla008856 vs. TrEMBL
Match: A0A0A0L151_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006620 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 2.3e-25 Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1
BLAST of Cla008856 vs. TrEMBL
Match: Q94F50_ARATH (AT5g48790/K24G6_12 OS=Arabidopsis thaliana GN=At5g48790 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23 Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1
BLAST of Cla008856 vs. TrEMBL
Match: R0EWX7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026810mg PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23 Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1
BLAST of Cla008856 vs. TrEMBL
Match: D7U3R3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g00230 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 8.1e-23 Identity = 49/59 (83.05%), Postives = 57/59 (96.61%), Query Frame = 1
BLAST of Cla008856 vs. TrEMBL
Match: A0A078DAK8_BRANA (BnaA06g29970D protein OS=Brassica napus GN=BnaA06g29970D PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 8.1e-23 Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1
BLAST of Cla008856 vs. NCBI nr
Match: gi|778674897|ref|XP_011650318.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus]) HSP 1 Score: 122.1 bits (305), Expect = 3.3e-25 Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1
BLAST of Cla008856 vs. NCBI nr
Match: gi|659095490|ref|XP_008448609.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24 Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
BLAST of Cla008856 vs. NCBI nr
Match: gi|659095488|ref|XP_008448608.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24 Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
BLAST of Cla008856 vs. NCBI nr
Match: gi|922532498|ref|XP_013597868.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Brassica oleracea var. oleracea]) HSP 1 Score: 114.4 bits (285), Expect = 6.8e-23 Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1
BLAST of Cla008856 vs. NCBI nr
Match: gi|727622608|ref|XP_010482145.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Camelina sativa]) HSP 1 Score: 114.4 bits (285), Expect = 6.8e-23 Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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