Cla008856 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008856
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Homology to unknown gene (AHRD V1 ***- Q01BY6_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995
Location	Chr10 : 1229950 .. 1230598 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTTTCACATTGACTTTTAAATCCTGCCAAACTTAATTAAAACAACTATTTCATCTTTTGTCTTAAAAATTAAATTTATTTTTTCTTGATTTGCATATTTCTTAACTAAAAAAGTCGAATTCTTATTCAAATTTCAAAAACAAAAACAATTTTTCTAAAACAATTTTTTTTTAGTTTTCAAATTTTTGCTTGATTTTTTAAAATATTGGTAAAAAGGTGGAATGAGTGCTTATAGTCTTAATTTTAAAAAACTAAAAACCAAGAACCTTACTAAACATTAAACAAGGCCTCCATTTATCTTTTCCTATTGAATAAACCACTTTTTTTAGTTTTAGAACTTGAGTAGAATTAATAACAAAACATAGAAATTTATGGATAAAAATAGTATTTATAAGCTTAATTTTTAAATGGCCTTTATTTTTTTTTCTTTTTTTTATTTTTTTCTTTTCTGGTTTGTTACGTAAATGTAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA

mRNA sequence

ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA

Coding sequence (CDS)

ATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTAAACATTCTTCCTTCATCTTAA

Protein sequence

METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS

Homology

[Close]

BLAST of Cla008856 vs. TrEMBL
Match: A0A0A0L151_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006620 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-25
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFR YPGPWKVLRK+RNKFVCVHQQE+MPSLKEVALNILPSS
Sbjct: 268 METVYYIHNFKGQKGGVLFRSYPGPWKVLRKVRNKFVCVHQQEEMPSLKEVALNILPSS 326

[Close]

BLAST of Cla008856 vs. TrEMBL
Match: Q94F50_ARATH (AT5g48790/K24G6_12 OS=Arabidopsis thaliana GN=At5g48790 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFRCYPGPW+VLR+ RNK++CVHQQE MPSLKEVAL+IL S+
Sbjct: 258 METVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNKYICVHQQESMPSLKEVALDILASA 316

[Close]

BLAST of Cla008856 vs. TrEMBL
Match: R0EWX7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026810mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFRCYPGPW+VLR+ RNK++CVHQQE MPSLKEVAL+IL S+
Sbjct: 256 METVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNKYICVHQQESMPSLKEVALDILASA 314

[Close]

BLAST of Cla008856 vs. TrEMBL
Match: D7U3R3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g00230 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-23
Identity = 49/59 (83.05%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKG+KGG LFRCYPGPWKVLRK+RN+++C+HQQE MPSLKEVAL+ILPS+
Sbjct: 264 METVYYIHNFKGRKGGTLFRCYPGPWKVLRKVRNEYICLHQQEVMPSLKEVALDILPSA 322

[Close]

BLAST of Cla008856 vs. TrEMBL
Match: A0A078DAK8_BRANA (BnaA06g29970D protein OS=Brassica napus GN=BnaA06g29970D PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFRCYPGPW+VLR+ RNK +CVHQQE MPSLKEVALNIL S+
Sbjct: 259 METVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNKCICVHQQETMPSLKEVALNILASA 317

[Close]

BLAST of Cla008856 vs. NCBI nr
Match: gi|778674897|ref|XP_011650318.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-25
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFR YPGPWKVLRK+RNKFVCVHQQE+MPSLKEVALNILPSS
Sbjct: 268 METVYYIHNFKGQKGGVLFRSYPGPWKVLRKVRNKFVCVHQQEEMPSLKEVALNILPSS 326

[Close]

BLAST of Cla008856 vs. NCBI nr
Match: gi|659095490|ref|XP_008448609.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFR YPGPWKVLRK+RNK  CVHQQE+MPSLKEVALNILPSS
Sbjct: 268 METVYYIHNFKGQKGGVLFRSYPGPWKVLRKVRNKLACVHQQEEMPSLKEVALNILPSS 326

[Close]

BLAST of Cla008856 vs. NCBI nr
Match: gi|659095488|ref|XP_008448608.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-24
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFR YPGPWKVLRK+RNK  CVHQQE+MPSLKEVALNILPSS
Sbjct: 279 METVYYIHNFKGQKGGVLFRSYPGPWKVLRKVRNKLACVHQQEEMPSLKEVALNILPSS 337

[Close]

BLAST of Cla008856 vs. NCBI nr
Match: gi|922532498|ref|XP_013597868.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 114.4 bits (285), Expect = 6.8e-23
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFRCYPGPW+VLR+ RNK VCVHQQE MPSLKEVALNIL S+
Sbjct: 268 METVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNKCVCVHQQESMPSLKEVALNILASA 326

[Close]

BLAST of Cla008856 vs. NCBI nr
Match: gi|727622608|ref|XP_010482145.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Camelina sativa])

HSP 1 Score: 114.4 bits (285), Expect = 6.8e-23
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   METVYYIHNFKGQKGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVALNILPSS 60
           METVYYIHNFKGQKGGVLFRCYPGPW+VLR+ RNK+VCVHQQE MPSLKEVAL+IL S+
Sbjct: 259 METVYYIHNFKGQKGGVLFRCYPGPWQVLRRTRNKYVCVHQQESMPSLKEVALDILTSA 317

The following BLAST results are available for this feature:

BLAST of Cla008856 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L151_CUCSA	2.3e-25	94.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006620 PE=4 SV=1	[more]
Q94F50_ARATH	6.2e-23	84.75	AT5g48790/K24G6_12 OS=Arabidopsis thaliana GN=At5g48790 PE=2 SV=1	[more]
R0EWX7_9BRAS	6.2e-23	84.75	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026810mg PE=4 SV=1	[more]
D7U3R3_VITVI	8.1e-23	83.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g00230 PE=4 SV=...	[more]
A0A078DAK8_BRANA	8.1e-23	86.44	BnaA06g29970D protein OS=Brassica napus GN=BnaA06g29970D PE=4 SV=1	[more]

BLAST of Cla008856 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674897\|ref\|XP_011650318.1\|	3.3e-25	94.92	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus]	[more]
gi\|659095490\|ref\|XP_008448609.1\|	4.7e-24	91.53	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Cucumis me...	[more]
gi\|659095488\|ref\|XP_008448608.1\|	4.7e-24	91.53	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis me...	[more]
gi\|922532498\|ref\|XP_013597868.1\|	6.8e-23	88.14	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Brassica o...	[more]
gi\|727622608\|ref\|XP_010482145.1\|	6.8e-23	86.44	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018962	DUF1995

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0035304	regulation of protein dephosphorylation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU43500	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008856	Cla008856.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU43500	WMU43500	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 1..52 score: 1.1
None	No IPR available	PANTHER	PTHR34051	FAMILY NOT NAMED	coord: 1..58 score: 1.4
None	No IPR available	PANTHER	PTHR34051:SF1	SUBFAMILY NOT NAMED	coord: 1..58 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008856	Wild cucumber (PI 183967)	cpiwmB200
Cla008856	Melon (DHL92) v3.5.1	mewmB446
Cla008856	Watermelon (Charleston Gray)	wcgwmB056
Cla008856	Cucumber (Chinese Long) v2	cuwmB200
Cla008856	Cucurbita pepo (Zucchini)	cpewmB202
Cla008856	Cucurbita pepo (Zucchini)	cpewmB829
Cla008856	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008856	Cucumber (Gy14) v2	cgybwmB188
Cla008856	Melon (DHL92) v3.6.1	medwmB438
Cla008856	Silver-seed gourd	carwmB0678
Cla008856	Silver-seed gourd	carwmB1049
Cla008856	Cucumber (Chinese Long) v3	cucwmB209
Cla008856	Watermelon (97103) v2	wmwmbB056
Cla008856	Wax gourd	wgowmB576
Cla008856	Cucumber (Gy14) v1	cgywmB583
Cla008856	Cucurbita maxima (Rimu)	cmawmB292
Cla008856	Cucurbita maxima (Rimu)	cmawmB789
Cla008856	Cucurbita moschata (Rifu)	cmowmB285
Cla008856	Cucurbita moschata (Rifu)	cmowmB783