WMU43500 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU43500
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Domain of unknown function (DUF1995)
Location	Chr10 : 1227328 .. 1231399 (+)
Sequence length	895

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCAATCAAGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTTGAATCAGTTCCAGTAACTTGTTTTGCCTGTTACAGACCGTATAACCTTATGTATCAGGTGATGGCGAAGGAGGAATTGAAATGACCGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCATTGAAAGCCACTCGGACAAGAGTACATTTGAAGGAGTTTCATTCAAGTTGGACTACCTCACAAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAGAATGGCTGACCGTGTGAAACCAGAAGATGAGCTTTTTCTGGTTGCATATCCATATTTCAATGTTAATGAAATGCTTGTGGTCGAAGAGCTTTACAATGAAGCTGTCCAAAACACTACACGAAAACTCATAATATTTAATGGAGAGCTCGACCGCATTAGATCTGGCTACTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTCATGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATTCACAACTTCAAGGGGCAGAAAGGAGGAGTTCTTTTCAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAATTAAGGAACAAATTCGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTTAAACATTCTTCCTTCATCTTAAGGGTCTTATATTAGTCTGTATTACCGTTCATTGTGATGTGAAGAGGATGATGCTTTGTTCCTTAGCATCAAAGTCTTTTCTGGTAAAATGCTACATCGACATAATCTGTATATTCTTATCAAATATTTGACGTCCATAAAATTGAAGAAATGCCTAATAACATA

Library


Library category	ESTs
watermelon fruit 10d library	2
Watermelon normalization and subtraction library	3

Homology

[Close]

BLAST of WMU43500 vs. TAIR10
Match: AT5G48790.1 (AT5G48790.1 Domain of unknown function (DUF1995))

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-77
Identity = 136/159 (85.53%), Postives = 142/159 (89.31%), Query Frame = 2


Query: 230 SDKSTFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVE 289
           + K+ F G  FKLDYLTKPS FEDFGF E+V+MADRVKPEDELFLVAYPYFNVNEMLVVE
Sbjct: 151 AQKTVFGGTYFKLDYLTKPSLFEDFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVE 210

Query: 290 ELYNEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 349
           ELY EAV NT RKLIIFNGELDRIRSGYYP FFYPKLAAL KTL PKMETVYYIHNFKGQ
Sbjct: 211 ELYKEAVVNTDRKLIIFNGELDRIRSGYYPKFFYPKLAALTKTLLPKMETVYYIHNFKGQ 270

Query: 350 KGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 409
           KGGVLFRCYPGPW+VLR+ RNK++CVHQQE MPSLKEVA
Sbjct: 271 KGGVLFRCYPGPWQVLRRTRNKYICVHQQESMPSLKEVA 309

Query: 410  469
           
Sbjct: 331  309

Query: 470  529
           
Sbjct: 391  309

Query: 530  589
           
Sbjct: 451  309

Query: 590  649
           
Sbjct: 511  309

Query: 650  707
           
Sbjct: 571  309

HSP 2 Score: 52.0 bits (123), Expect = 7.4e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 1   LNQAKKATEAALRDNKQLMEIEFPTAGLESVP 60
           +NQAK+A E AL+D KQLMEIEFPT+GL SVP
Sbjct: 75  INQAKEAVEMALKDEKQLMEIEFPTSGLASVP 106

Query: 61   97
           
Sbjct: 135  106

HSP 3 Score: 48.5 bits (114), Expect = 8.2e-06
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 3


Query: 135 VSGDGEGGIEMTESMQLIRQFCDCFIDPLKATRTRVHLKE 194
           V GDGEG  EMTES+ +IR+FCD  + P KA  TR+   E
Sbjct: 105 VPGDGEGATEMTESINMIREFCDRLLAPEKARSTRIFFPE 144

Query: 195  254
           
Sbjct: 165  144

[Close]

BLAST of WMU43500 vs. NCBI nr
Match: gi|778674897|ref|XP_011650318.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 148/159 (93.08%), Postives = 154/159 (96.86%), Query Frame = 2


Query: 230 SDKSTFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVE 289
           +  + FEGVSFKLDYLTKPSFFEDFGFVEKV+MADRVKPEDELFLVAYPYFNVNEMLVVE
Sbjct: 161 ARNTAFEGVSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVE 220

Query: 290 ELYNEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 349
           ELY EAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFP+METVYYIHNFKGQ
Sbjct: 221 ELYKEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPEMETVYYIHNFKGQ 280

Query: 350 KGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 409
           KGGVLFR YPGPWKVLRK+RNKFVCVHQQE+MPSLKEVA
Sbjct: 281 KGGVLFRSYPGPWKVLRKVRNKFVCVHQQEEMPSLKEVA 319

Query: 410  469
           
Sbjct: 341  319

Query: 470  529
           
Sbjct: 401  319

Query: 530  589
           
Sbjct: 461  319

Query: 590  649
           
Sbjct: 521  319

Query: 650  707
           
Sbjct: 581  319

[Close]

BLAST of WMU43500 vs. NCBI nr
Match: gi|659095490|ref|XP_008448609.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 5.6e-81
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 2


Query: 230 SDKSTFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVE 289
           +  + FEGVSFKLDYLTKPSFFEDFGFVEKV+MADRVKPEDELFLVAYPYFNVNEMLVVE
Sbjct: 161 ARNTAFEGVSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVE 220

Query: 290 ELYNEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 349
           ELY EAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ
Sbjct: 221 ELYKEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 280

Query: 350 KGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 409
           KGGVLFR YPGPWKVLRK+RNK  CVHQQE+MPSLKEVA
Sbjct: 281 KGGVLFRSYPGPWKVLRKVRNKLACVHQQEEMPSLKEVA 319

Query: 410  469
           
Sbjct: 341  319

Query: 470  529
           
Sbjct: 401  319

Query: 530  589
           
Sbjct: 461  319

Query: 590  649
           
Sbjct: 521  319

Query: 650  707
           
Sbjct: 581  319

[Close]

BLAST of WMU43500 vs. NCBI nr
Match: gi|659095488|ref|XP_008448608.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 5.6e-81
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 2


Query: 230 SDKSTFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVE 289
           +  + FEGVSFKLDYLTKPSFFEDFGFVEKV+MADRVKPEDELFLVAYPYFNVNEMLVVE
Sbjct: 172 ARNTAFEGVSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVE 231

Query: 290 ELYNEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 349
           ELY EAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ
Sbjct: 232 ELYKEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQ 291

Query: 350 KGGVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 409
           KGGVLFR YPGPWKVLRK+RNK  CVHQQE+MPSLKEVA
Sbjct: 292 KGGVLFRSYPGPWKVLRKVRNKLACVHQQEEMPSLKEVA 330

Query: 410  469
           
Sbjct: 352  330

Query: 470  529
           
Sbjct: 412  330

Query: 530  589
           
Sbjct: 472  330

Query: 590  649
           
Sbjct: 532  330

Query: 650  707
           
Sbjct: 592  330

[Close]

BLAST of WMU43500 vs. NCBI nr
Match: gi|703152496|ref|XP_010110433.1| (hypothetical protein L484_022839 [Morus notabilis])

HSP 1 Score: 293.9 bits (751), Expect = 3.2e-76
Identity = 139/156 (89.10%), Postives = 144/156 (92.31%), Query Frame = 2


Query: 239 STFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVEELY 298
           S F G SFKLDYLTKPSFFEDFGFVEKV+M DRVKPEDELFLVAYPYFNVNEMLVVEELY
Sbjct: 148 SAFGGASFKLDYLTKPSFFEDFGFVEKVKMKDRVKPEDELFLVAYPYFNVNEMLVVEELY 207

Query: 299 NEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQKGG 358
            EAV NTTRKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFP METVYYIHNFKG KGG
Sbjct: 208 KEAVTNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALSKTLFPLMETVYYIHNFKGAKGG 267

Query: 359 VLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 418
            LFR YPGPWKVLRK+RNK++C+HQQE MPSLKEVA
Sbjct: 268 TLFRSYPGPWKVLRKVRNKYICLHQQETMPSLKEVA 303

Query: 419  478
           
Sbjct: 328  303

Query: 479  538
           
Sbjct: 388  303

Query: 539  598
           
Sbjct: 448  303

Query: 599  658
           
Sbjct: 508  303

Query: 659  707
           
Sbjct: 568  303

[Close]

BLAST of WMU43500 vs. NCBI nr
Match: gi|1009158566|ref|XP_015897355.1| (PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 292.7 bits (748), Expect = 7.1e-76
Identity = 136/157 (86.62%), Postives = 145/157 (92.36%), Query Frame = 2


Query: 236 KSTFEGVSFKLDYLTKPSFFEDFGFVEKVRMADRVKPEDELFLVAYPYFNVNEMLVVEEL 295
           +S FEG SFKLDYLTKPSFFEDFGFVEKV+M DRVK EDELFLV YPYFNVNEMLVVEEL
Sbjct: 154 QSAFEGASFKLDYLTKPSFFEDFGFVEKVKMTDRVKAEDELFLVGYPYFNVNEMLVVEEL 213

Query: 296 YNEAVQNTTRKLIIFNGELDRIRSGYYPPFFYPKLAALMKTLFPKMETVYYIHNFKGQKG 355
           Y +AV NT RKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFPKMETVYYIHNFKG+ G
Sbjct: 214 YKDAVVNTDRKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGRNG 273

Query: 356 GVLFRCYPGPWKVLRKLRNKFVCVHQQEDMPSLKEVA 415
           G LFRCYPGPWKVLRK+RN+++C+HQQE MPSLKEVA
Sbjct: 274 GTLFRCYPGPWKVLRKVRNRYICLHQQEAMPSLKEVA 310

Query: 416  475
           
Sbjct: 334  310

Query: 476  535
           
Sbjct: 394  310

Query: 536  595
           
Sbjct: 454  310

Query: 596  655
           
Sbjct: 514  310

Query: 656  707
           
Sbjct: 574  310

The following BLAST results are available for this feature:

BLAST of WMU43500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48790.1	1.0e-77	85.53	Domain of unknown function (DUF1995)	[more]

BLAST of WMU43500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674897\|ref\|XP_011650318.1\|	1.1e-81	93.08	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Cucumis sativus]	[more]
gi\|659095490\|ref\|XP_008448609.1\|	5.6e-81	92.45	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Cucumis me...	[more]
gi\|659095488\|ref\|XP_008448608.1\|	5.6e-81	92.45	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Cucumis me...	[more]
gi\|703152496\|ref\|XP_010110433.1\|	3.2e-76	89.10	hypothetical protein L484_022839 [Morus notabilis]	[more]
gi\|1009158566\|ref\|XP_015897355.1\|	7.1e-76	86.62	PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR018962	DUF1995

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008855	Cla008855	gene
Cla008856	Cla008856	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0130567	S1_0130567	EST
S1_0157210	S1_0157210	EST
WMN05D12	WMN05D12	EST
WMN14G09	WMN14G09	EST
WMN40D09	WMN40D09	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 2..236 score: 3.2
None	No IPR available	PANTHER	PTHR34051	FAMILY NOT NAMED	coord: 1..32 score: 4.1E-122coord: 48..236 score: 4.1E
None	No IPR available	PANTHER	PTHR34051:SF1	SUBFAMILY NOT NAMED	coord: 1..32 score: 4.1E-122coord: 48..236 score: 4.1E