ClCG09G001240 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G001240
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionSAUR-like auxin-responsive protein family LENGTH=119
LocationCG_Chr09 : 1159503 .. 1159874 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

mRNA sequence

ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

Coding sequence (CDS)

ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

Protein sequence

MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRLYYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEFYTC
Homology
[Close]
BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0A0KAQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-53
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G+N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]
BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A067L984_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.3e-34
Identity = 76/121 (62.81%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M K G LTKLKSAIKRWPS TKLGR++SS++ +T      I  N S++L+ VYVGKSRR 
Sbjct: 1   MAKIGKLTKLKSAIKRWPSFTKLGRTNSSIAAST----DVIEDNISRELQAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y +S DV+ HPLFQEL+++S   DDG +V+SCEVV+FEHLLWMLE   +QLGS EELA+F
Sbjct: 61  YLLSSDVICHPLFQELIERSGGFDDGQVVISCEVVLFEHLLWMLEGGGSQLGSMEELADF 117

Query: 121 Y 122
           Y
Sbjct: 121 Y 117

[Close]
BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0B2P178_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009658 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKD-------LRTVY 60
           M K G LTKLKSAIKRWPS+T+L R+SSS+S      G     N+SK+       LR VY
Sbjct: 1   MAKVGKLTKLKSAIKRWPSLTRLSRNSSSVSSNKGVSGKGTSLNSSKEHEHEQEQLRAVY 60

Query: 61  VGKSRRLYYVSLDVVAHPLFQELVDKSS---------FDDDGVLVVSCEVVMFEHLLWML 120
           VGKSRR Y V+ +V+ HP+FQELVD+S           DDDGV+VVSCEVV+FEHLLWML
Sbjct: 61  VGKSRRRYLVNSEVIDHPVFQELVDRSCSSNSSSSHHHDDDGVVVVSCEVVLFEHLLWML 120

Query: 121 ENAATQLGSTEELAEFYTC 124
           E+  T+LGS +EL EFY+C
Sbjct: 121 ESEETKLGSMDELVEFYSC 139

[Close]
BLAST of ClCG09G001240 vs. TrEMBL
Match: I1KHG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G043500 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKD-------LRTVY 60
           M K G LTKLKSAIKRWPS+T+L R+SSS+S      G     N+SK+       LR VY
Sbjct: 1   MAKVGKLTKLKSAIKRWPSLTRLSRNSSSVSSNKGVSGKGTSLNSSKEHEHEQEQLRAVY 60

Query: 61  VGKSRRLYYVSLDVVAHPLFQELVDKSS---------FDDDGVLVVSCEVVMFEHLLWML 120
           VGKSRR Y V+ +V+ HP+FQELVD+S           DDDGV+VVSCEVV+FEHLLWML
Sbjct: 61  VGKSRRRYLVNSEVIDHPVFQELVDRSCSSNSSSSHHHDDDGVVVVSCEVVLFEHLLWML 120

Query: 121 ENAATQLGSTEELAEFYTC 124
           E+  T+LGS +EL EFY+C
Sbjct: 121 ESEETKLGSMDELVEFYSC 139

[Close]
BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0A0LBZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGT--NIGQNNSKDLRTVYVGKSR 60
           M K G LTKLKSAIKRWPSI+KL R+++  S + VS+ T  N   N++  L  V+VG+SR
Sbjct: 1   MAKLGKLTKLKSAIKRWPSISKLSRATTPTSSSAVSNATLDNDNHNHNHHLHPVFVGRSR 60

Query: 61  RLYYVSLDVVAHPLFQELVDKSSFD-DDGVLVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           R Y +S DVV HPLFQELVDKSS + ++  LV+SCEVV+FEHLLWMLENAATQLGS +EL
Sbjct: 61  RRYLLSSDVVHHPLFQELVDKSSPNSEEQGLVISCEVVLFEHLLWMLENAATQLGSADEL 120

Query: 121 AEFYT 123
            +FYT
Sbjct: 121 VQFYT 125

[Close]
BLAST of ClCG09G001240 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-27
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 1 

Query: 5   GTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRLYYVS 64
           G LTKLKSAIK+WPS+TK   S+   +   VS+      +  +DL  VYVGKSRR Y +S
Sbjct: 5   GKLTKLKSAIKKWPSLTKNHHSTMCTASTAVSE-----VSKCEDLHVVYVGKSRRPYMLS 64

Query: 65  LDVVAHPLFQELVDKSS-----FDDDGVLVVSCEVVMFEHLLWMLENAAT--------QL 123
             V+AHPLFQEL+D+SS       D   ++V+CEVV+FEHLLWML+N+++        + 
Sbjct: 65  SHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWMLKNSSSDHGDEDDRER 124

[Close]
BLAST of ClCG09G001240 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 5.9e-27
Identity = 67/125 (53.60%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M K G LTKLKSA+K+WPS  K    S+S   A VSD   + ++N+  L  VYVG++RR 
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHSTSS--AAVSD--ELSEDNN--LHVVYVGQTRRP 60

Query: 61  YYVSLDVVAHPLFQELVDKS---SFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           Y +  D+++HPLFQELVD+S   S + D  +VV+CEVV+FEHLLWML+ +  + GS EEL
Sbjct: 61  YMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLK-SGQEGGSVEEL 118

Query: 121 AEFYT 123
           AEFYT
Sbjct: 121 AEFYT 118

[Close]
BLAST of ClCG09G001240 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-22
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 1   MVKAGT-LTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRR 60
           M K G  L KLKS +K+  S     + +   +    S  + +    S+DL+TVYVG++RR
Sbjct: 1   MAKGGNKLMKLKSVLKKLNSFNT--KPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRR 60

Query: 61  LYYVSLDVVAHPLFQEL--VDKSSFDDDGVLVVSCEVVMFEHLLWMLENA---ATQLGST 120
            Y+VS DVV+HPLFQ+L  VD     +DG + VSCEVV+FEHLLWMLENA    ++  S 
Sbjct: 61  TYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLENADADESRPESV 120

Query: 121 EELAEFYTC 124
            EL EFY C
Sbjct: 121 YELVEFYAC 127

[Close]
BLAST of ClCG09G001240 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 1 

Query: 9   KLKSAIKRWPSI-TKLGRSSSSMSVATVSDGTNIGQNNSKDL---------RTVYVGKSR 68
           +L   ++R  S+ T+LGRS S  S+ + S   +  Q++ +D+         +TV VG+++
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRD-PQDHLQDVDQSPTPSMYQTVLVGRTK 65

Query: 69  RLYYVSLDVVAHPLFQELVDKSSF-----DDDG--VLVVSCEVVMFEHLLWMLE--NAAT 122
           + Y +S   + HPL   LV+K        ++DG  ++ V CEVV+F+HLLWMLE  +   
Sbjct: 66  KPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLEYGDEVH 125

[Close]
BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|449447940|ref|XP_004141724.1| (PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.9e-53
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G+N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]
BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|659124623|ref|XP_008462260.1| (PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGGNVGDNTNSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]
BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|470135872|ref|XP_004303730.1| (PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca])

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-36
Identity = 82/128 (64.06%), Postives = 96/128 (75.00%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNN-----SKDLRTVYVG 60
           M K G LTKLKSAIKRWPS TKL R++SS++ A     ++   N+     SK L  VYVG
Sbjct: 1   MAKTGKLTKLKSAIKRWPSFTKLARTTSSIAAANEDSSSDQYDNDRAAVISKQLHAVYVG 60

Query: 61  KSRRLYYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTE 120
           KSRR Y VS DVV HP+ QELVDKS  +++GV+VVSCEVV+FEHLLWMLENA TQLGS +
Sbjct: 61  KSRRRYMVSSDVVEHPIIQELVDKSCEEEEGVVVVSCEVVLFEHLLWMLENAETQLGSMD 120

Query: 121 ELAEFYTC 124
           EL EFYTC
Sbjct: 121 ELVEFYTC 128

[Close]
BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|657977676|ref|XP_008380756.1| (PREDICTED: uncharacterized protein LOC103443648 [Malus domestica])

HSP 1 Score: 156.0 bits (393), Expect = 4.3e-35
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M KAG LTKLKSAIKRWPS TKL R++SS++ AT  D ++     SK+L  VYVGKSRR 
Sbjct: 1   MAKAGKLTKLKSAIKRWPSFTKLTRTTSSIAAATSDDQSDHVSKGSKELHAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y VS +VV HP+ QELVD SS    G +VV+CEVV+FEHLLWMLENA TQLGS +EL EF
Sbjct: 61  YLVSSEVVEHPVIQELVDTSS----GEVVVACEVVLFEHLLWMLENAETQLGSMDELVEF 119

Query: 121 YTC 124
           YTC
Sbjct: 121 YTC 119

[Close]
BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|694420916|ref|XP_009338336.1| (PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri])

HSP 1 Score: 155.2 bits (391), Expect = 7.3e-35
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1 

Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M KAG LTKLKSAIKRWPS TKL R++SS++ A   D ++     SK+L  VYVGKSRR 
Sbjct: 1   MAKAGKLTKLKSAIKRWPSFTKLTRTTSSIAAAASDDQSDHVSKGSKELHAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y VS DVV HP+ QELVD SS    G +VV+CEVV+FEHLLWMLENA TQLGS +EL EF
Sbjct: 61  YLVSSDVVDHPVIQELVDTSS----GEVVVACEVVLFEHLLWMLENAETQLGSMDELVEF 119

Query: 121 YTC 124
           YTC
Sbjct: 121 YTC 119

The following BLAST results are available for this feature:
BLAST of ClCG09G001240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAQ4_CUCSA4.1e-5388.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1[more]
A0A067L984_JATCU4.3e-3462.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1[more]
A0A0B2P178_GLYSO2.1e-3357.55Uncharacterized protein OS=Glycine soja GN=glysoja_009658 PE=4 SV=1[more]
I1KHG8_SOYBN2.1e-3357.55Uncharacterized protein OS=Glycine max GN=GLYMA_07G043500 PE=4 SV=1[more]
A0A0A0LBZ7_CUCSA3.6e-3363.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1[more]
BLAST of ClCG09G001240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17345.12.7e-2751.15 SAUR-like auxin-responsive protein family [more]
AT1G72430.15.9e-2753.60 SAUR-like auxin-responsive protein family [more]
AT5G20820.15.7e-2247.29 SAUR-like auxin-responsive protein family [more]
AT3G12955.13.3e-0933.33 SAUR-like auxin-responsive protein family [more]
BLAST of ClCG09G001240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447940|ref|XP_004141724.1|5.9e-5388.80PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus][more]
gi|659124623|ref|XP_008462260.1|1.7e-5288.80PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo][more]
gi|470135872|ref|XP_004303730.1|2.3e-3664.06PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca][more]
gi|657977676|ref|XP_008380756.1|4.3e-3565.85PREDICTED: uncharacterized protein LOC103443648 [Malus domestica][more]
gi|694420916|ref|XP_009338336.1|7.3e-3565.85PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G001240.1ClCG09G001240.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 11..104
score: 5.0
NoneNo IPR availablePANTHERPTHR31374FAMILY NOT NAMEDcoord: 1..123
score: 1.9
NoneNo IPR availablePANTHERPTHR31374:SF25SUBFAMILY NOT NAMEDcoord: 1..123
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G001240Csa3G646510Cucumber (Chinese Long) v2cuwcgB179
ClCG09G001240Csa7G448680Cucumber (Chinese Long) v2cuwcgB524
ClCG09G001240MELO3C022688Melon (DHL92) v3.5.1mewcgB308
ClCG09G001240MELO3C024323Melon (DHL92) v3.5.1mewcgB174
ClCG09G001240Cla015521Watermelon (97103) v1wcgwmB007
ClCG09G001240Cla012544Watermelon (97103) v1wcgwmB022
ClCG09G001240Cla97C07G141260Watermelon (97103) v2wcgwmbB032
ClCG09G001240Cla97C09G163310Watermelon (97103) v2wcgwmbB035
ClCG09G001240Bhi01G002226Wax gourdwcgwgoB028
ClCG09G001240Bhi09G000220Wax gourdwcgwgoB068
ClCG09G001240CSPI07G22230Wild cucumber (PI 183967)cpiwcgB553
ClCG09G001240CSPI03G28500Wild cucumber (PI 183967)cpiwcgB182
ClCG09G001240Cucsa.149350Cucumber (Gy14) v1cgywcgB252
ClCG09G001240Cucsa.359950Cucumber (Gy14) v1cgywcgB610
ClCG09G001240CmaCh08G008200Cucurbita maxima (Rimu)cmawcgB778
ClCG09G001240CmaCh14G012050Cucurbita maxima (Rimu)cmawcgB214
ClCG09G001240CmaCh17G006640Cucurbita maxima (Rimu)cmawcgB308
ClCG09G001240CmoCh17G006430Cucurbita moschata (Rifu)cmowcgB301
ClCG09G001240CmoCh14G012340Cucurbita moschata (Rifu)cmowcgB202
ClCG09G001240Lsi07G006530Bottle gourd (USVL1VR-Ls)lsiwcgB388
ClCG09G001240Lsi02G028720Bottle gourd (USVL1VR-Ls)lsiwcgB160
ClCG09G001240Cp4.1LG03g14860Cucurbita pepo (Zucchini)cpewcgB537
ClCG09G001240Cp4.1LG12g09450Cucurbita pepo (Zucchini)cpewcgB128
ClCG09G001240Cp4.1LG17g04190Cucurbita pepo (Zucchini)cpewcgB284
ClCG09G001240CsGy3G026480Cucumber (Gy14) v2cgybwcgB165
ClCG09G001240CsGy7G020540Cucumber (Gy14) v2cgybwcgB484
ClCG09G001240MELO3C024323.2Melon (DHL92) v3.6.1medwcgB168
ClCG09G001240MELO3C022688.2Melon (DHL92) v3.6.1medwcgB302
ClCG09G001240Carg06383Silver-seed gourdcarwcgB0118
ClCG09G001240Carg13911Silver-seed gourdcarwcgB0584
ClCG09G001240Carg18957Silver-seed gourdcarwcgB0741
ClCG09G001240CsaV3_7G034130Cucumber (Chinese Long) v3cucwcgB546
ClCG09G001240CsaV3_3G030900Cucumber (Chinese Long) v3cucwcgB185
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG09G001240ClCG07G014380Watermelon (Charleston Gray)wcgwcgB035
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G001240Watermelon (Charleston Gray)wcgwcgB032
ClCG09G001240Cucurbita maxima (Rimu)cmawcgB218
ClCG09G001240Cucurbita moschata (Rifu)cmowcgB779
ClCG09G001240Silver-seed gourdcarwcgB0119